Re: [galaxy-user] calculating percent coverage over the target genome

Hi Jen, Many thanks for this, on a related subject do you know of a way to correct a FASTA file on the basis of a pileup (or even just on the BAM file)? Best Wishes, David. __ Dr David A. Matthews Senior Lecturer in Virology Room E49 Department of Cellular and

Re: [galaxy-user] calculating percent coverage over the target genome

Hello David, To calculate coverage, please see the tool "Regional Variation -> Feature coverage". Query and target must both be in Interval/BED format. Query data in Interval/BED format is possible in most of the dataflow paths through the tools and from external sources. The reference genome