Hello Aleks,

Without seeing your history, I guess would be that you need to assign a reference genome and then confirm that that reference genome is available at UCSC.

If none of this seems to be the case with your issue, please send a shared history link and we can take a look. To share a link, from the right top of the history pane, use "Options" -> Share or Publish, create the share link, and email it back directly to me.

Thanks!

Jen
Galaxy team

On 7/12/11 3:29 PM, Aleks Schein wrote:
Hi all,

I am doing cufflinks assembly of TopHat-aligned NGS reads with Refseq
gene track as reference annotation. All works, but resulting gtf files
cannot be displayed in UCSC browser. I use "display at UCSC main" link,
but get a message:"Error 500: Internal Server Error".
Has anyone experienced this problem recently?

regards,

Aleks
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

http://lists.bx.psu.edu/

--
Jennifer Jackson
http://usegalaxy.org/
http://galaxyproject.org/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/

Reply via email to