Re: [galaxy-user] cufflinks visualization

2012-11-03 Thread Jeremy Goecks
(cc'ing back to galaxy-user because this information may be useful to others) The problem is that the reference gene annotation that you're using, RefGene from UCSC, has an error. Specifically, a transcript_id attribute is duplicated for two different transcripts, one on chr1 and one on chr19:

Re: [galaxy-user] cufflinks visualization

2012-11-01 Thread Jeremy Goecks
I'm able to visualize Cufflinks assembled transcripts in Trackster. Can you please be more specific about (a) which datasets you're having trouble using and (b) what errors you're seeing? Thanks, J. On Oct 31, 2012, at 1:10 PM, i b wrote: > Hi all, > can anyone explain me wh how can I visualiz