Hello Janice,
Are you using the public Main Galaxy instance at http://usegalaxy.org?
Would you be able to submit this as a bug report?
Thanks,
Jen
Galaxy team
On 2/10/14 11:07 AM, Janice Patterson wrote:
I am analyzing RNA-seq data and I ran Cufflinks with the genes.gtf as
a reference
Hello Christopher,
We did some testing here using your available data and are fairly
certain that the problem is with the tool itself and not the Galaxy
wrapper. Contacting the author and asking about the issue is probably
the best way forward. If you have time, we would be glad to learn
Hello Christopher,
I see that this was also posted at SeqAnswers yesterday. I searched and
didn't see anything specifically in the manual or at seqanswers that
addresses this (but if someone else can find it, please add to this thread):
http://seqanswers.com/forums/showthread.php?t=20084
Do
Carol,
My question is, if I use the public Galaxy server interface to TopHat and
Cufflinks, is there any access to cuffmerge?
No, Cuffmerge is not available in Galaxy.
Also, I'm trying to understand the difference between using cuffmerge and
then using cuffcompare (without a reference
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