Matthew,
Galaxy's pileup samtools wrapper does not use -v at all. Setting the
'Whether or not to print only output pileup lines containing indels'
option to 'Print only lines containing indels' sets -i.
Thanks,
Kelly
On Wed Jul 13, at 6:53 PM, Matthew McCormack wrote:
Is choosing 'Print only lines containing indels' in the 'Whether or
not to print only output lines containing indels' drop down for
Generate pileup, the same as the -v option in SAMTools pileup ?
Matthew
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