Re: [galaxy-user] generating a new fasta from a pileup

Hi John, That would be totally fantastic - many thanks! Best Wishes, David. __ Dr David A. Matthews Senior Lecturer in Virology Room E49 Department of Cellular and Molecular Medicine, School of Medical Sciences University Walk, University of Bristol Bristol. BS8

Re: [galaxy-user] generating a new fasta from a pileup

I have some code which can do most of the requested things. Let me figure out how to galaxy around it, and I'll submit it. John Sent from my mobile device On 2011-07-30, at 12:47 AM, Jennifer Jackson wrote: > Hello David, > > Generating a consensus fasta sequence from a BAM or Pile-up file i

Re: [galaxy-user] generating a new fasta from a pileup

Hello David, Generating a consensus fasta sequence from a BAM or Pile-up file is not yet possible in Galaxy. To date, the Tool Shed also does not have a wrapped/novel tool for this function either. If you or another user were to create such a wrapped tool, it would be most welcome. As would