Hello Ateequr,
The quickest way to use new genomes with tools is to use them as a
custom reference genome. To do this, load the genome in fasta format
into your history and set tool form options to use reference genomes
"from the history".
Best practices:
1 - double check that the format is strict fasta (all lines wrapped
to same length, no extra lines or hidden characters, sequence entries
are unique within file).
2 - use the same genome dataset for all steps within an analysis
3 - load using FTP and make certain load is complete
http://galaxyproject.org/wiki/Learn/Upload%20via%20FTP
Hopefully this helps!
Best,
Jen
Galaxy team
On 1/13/12 7:00 AM, Ateequr Rehman wrote:
Dear Galaxy Administrator
I am analysing transcriptome and genome of clinical
isolatesStenotrophomonasmaltophilia, would be highly obliged if you
could please upload
Stenotrophomonas maltophilia K279 and Stenotrophomonas maltophilia
R551-3 genome
acccesion numbers at NCBI are as following
Stenotrophomonas maltophilia K279 (Accession AM743169)
*Stenotrophomonas maltophilia R551-3*, complete genome
<http://www.ncbi.nlm.nih.gov/nuccore/CP001111.1>
Accession: CP001111
Thanking you all in advance
Ateequr Rehman
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
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use the Galaxy Development list:
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