Re: [galaxy-user] inconsistant error messages on disk quota?

[Dannon Baker]

Hey Francis,

There's a bug in the current release of cloudman that causes files fetched by 
galaxy (this doesn't affect direct http or ftp upload) to use the root volume 
as temporary storage, which has very little space.  This is fixed in the next 
release scheduled to coincide with the galaxy-dist release.Until that's 
available, I'd recommend using one of the other upload options.  If this isn't 
possible, let me know and I'll try to figure out another workaround.  Sorry for 
the trouble!

-Dannon

On Oct 24, 2013, at 8:45 AM, Francis Ouellette  wrote:

> 
> I'm on cloudman, trying to upload files, and I'm getting this error message:
> 
> "No space left on device" transferring a 1 GB file to my instance, but the 
> cloudman console says I have more than 5 GB left?
> 
> Is this a bad error message?
> 
> Is there some other file you want to see?
> 
> @bffo
> 
> 
>  
> 
> 
> 
> 
> 
> 
> -- 
> B.F. Francis Ouellette  http://oicr.on.ca/person/francis-ouellette
> 
> ___
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> 
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Re: [galaxy-user] inconsistant error messages on disk quota?

[Dannon Baker]

One quick additional comment -- you may want to ssh in to the instance and 
remove any large upload files that were created in /tmp by galaxy, or other 
things might also start failing.


On Oct 26, 2013, at 3:03 PM, Dannon Baker  wrote:

> Hey Francis,
> 
> There's a bug in the current release of cloudman that causes files fetched by 
> galaxy (this doesn't affect direct http or ftp upload) to use the root volume 
> as temporary storage, which has very little space.  This is fixed in the next 
> release scheduled to coincide with the galaxy-dist release.Until that's 
> available, I'd recommend using one of the other upload options.  If this 
> isn't possible, let me know and I'll try to figure out another workaround.  
> Sorry for the trouble!
> 
> -Dannon
> 
> On Oct 24, 2013, at 8:45 AM, Francis Ouellette  wrote:
> 
>> 
>> I'm on cloudman, trying to upload files, and I'm getting this error message:
>> 
>> "No space left on device" transferring a 1 GB file to my instance, but the 
>> cloudman console says I have more than 5 GB left?
>> 
>> Is this a bad error message?
>> 
>> Is there some other file you want to see?
>> 
>> @bffo
>> 
>> 
>>  
>> 
>> 
>> 
>> 
>> 
>> 
>> -- 
>> B.F. Francis Ouellette  http://oicr.on.ca/person/francis-ouellette   
>>  
>> 
>> ___
>> The Galaxy User list should be used for the discussion of
>> Galaxy analysis and other features on the public server
>> at usegalaxy.org.  Please keep all replies on the list by
>> using "reply all" in your mail client.  For discussion of
>> local Galaxy instances and the Galaxy source code, please
>> use the Galaxy Development list:
>> 
>>  http://lists.bx.psu.edu/listinfo/galaxy-dev
>> 
>> To manage your subscriptions to this and other Galaxy lists,
>> please use the interface at:
>> 
>>  http://lists.bx.psu.edu/
>> 
>> To search Galaxy mailing lists use the unified search at:
>> 
>>  http://galaxyproject.org/search/mailinglists/
> 

___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
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Re: [galaxy-user] inconsistant error messages on disk quota?

[Francis Ouellette]

Thank you all for feedback … Workshop eneded yesterday, so hopefully
students read this list (as I advised them to do :-), and I will know
better next class I run!

Cheers to all,

@bffo

--
B.F. Francis Ouellette  http://oicr.on.ca/person/francis-ouellette




On 2013-10-26, at 3:13 PM, Dannon Baker 
mailto:siryopl...@gmail.com>>
 wrote:

One quick additional comment -- you may want to ssh in to the instance and 
remove any large upload files that were created in /tmp by galaxy, or other 
things might also start failing.


On Oct 26, 2013, at 3:03 PM, Dannon Baker 
mailto:siryopl...@gmail.com>> wrote:

Hey Francis,

There's a bug in the current release of cloudman that causes files fetched by 
galaxy (this doesn't affect direct http or ftp upload) to use the root volume 
as temporary storage, which has very little space.  This is fixed in the next 
release scheduled to coincide with the galaxy-dist release.Until that's 
available, I'd recommend using one of the other upload options.  If this isn't 
possible, let me know and I'll try to figure out another workaround.  Sorry for 
the trouble!

-Dannon

On Oct 24, 2013, at 8:45 AM, Francis Ouellette 
mailto:fran...@oicr.on.ca>> wrote:


I'm on cloudman, trying to upload files, and I'm getting this error message:

"No space left on device" transferring a 1 GB file to my instance, but the
cloudman console says I have more than 5 GB left?

Is this a bad error message?

Is there some other file you want to see?

@bffo









--
B.F. Francis Ouellette  http://oicr.on.ca/person/francis-ouellette

___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

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please use the interface at:

 http://lists.bx.psu.edu/

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 http://galaxyproject.org/search/mailinglists/



___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

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