Moved to galaxy-...@bx.psu.edu
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-December/017707.html
On 12/10/13 12:07 PM, Michael Mason wrote:
Hi,
I have run some top hap output through the samtools BAM-to-SAM
wrapper. It creates the SAM file about 50% of the time. The rest of
the time it makes an empty file. In this case if I just rerun it often
works. I was wondering if anyone else has seen this behavior. I am
using a cloud server and think I might need to change some settings.
This causes my workflow to fail for many libraries so I also
interested in any workarounds anyone has figured out.
Thanks in advance for any help.
Cheers
Mike
------------------------------------------------------------------------
--CONFIDENTIALITY NOTICE--: The information contained in this email is
intended for the exclusive use of the addressee and may contain
confidential information. If you are not the intended recipient, you
are hereby notified that any form of dissemination of this
communication is strictly prohibited. www.benaroyaresearch.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
--
Jennifer Hillman-Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
