Re: [galaxy-user] rna-seq mutation detection

any thoughts? > > Rich > > > From: Jeremy Goecks > To: Richard Mark White > Cc: "galaxy-user@lists.bx.psu.edu" > Sent: Sunday, August 28, 2011 2:18 PM > Subject: Re: [galaxy-user] rna-seq mutation detection > > Rich, > > Given that you

Re: [galaxy-user] rna-seq mutation detection

tools, but not sure precisely how to do this.  any thoughts? Rich From: Jeremy Goecks To: Richard Mark White Cc: "galaxy-user@lists.bx.psu.edu" Sent: Sunday, August 28, 2011 2:18 PM Subject: Re: [galaxy-user] rna-seq mutation detection Rich, Gi

Re: [galaxy-user] rna-seq mutation detection

===> Please use "Reply All" when responding to this email! <=== Rich, Given that you're analyzing your RNA-seq data using Galaxy, I'd guess that you're using Tophat to map your reads onto on reference genome. If this is the case, then you can use the BAM files produced by Tophat to generate va