commit: 2b0744a231b93f5e09b63375005fb6e522999c9a Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> AuthorDate: Sat Feb 20 20:21:18 2021 +0000 Commit: Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr> CommitDate: Sat Feb 20 21:57:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2b0744a2
sci-biology/rnaplex: Port to EAPI 7 Closes: https://bugs.gentoo.org/755770 Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> sci-biology/rnaplex/files/rnaplex-0.2-inline.patch | 14 ++++++++++++++ sci-biology/rnaplex/rnaplex-0.2.ebuild | 17 ++++++++++++----- 2 files changed, 26 insertions(+), 5 deletions(-) diff --git a/sci-biology/rnaplex/files/rnaplex-0.2-inline.patch b/sci-biology/rnaplex/files/rnaplex-0.2-inline.patch new file mode 100644 index 000000000..30d05cd97 --- /dev/null +++ b/sci-biology/rnaplex/files/rnaplex-0.2-inline.patch @@ -0,0 +1,14 @@ +--- a/lib/fold.c ++++ b/lib/fold.c +@@ -64,9 +64,9 @@ PRIVATE void backtrack(const char *sequence, int s); + PRIVATE int fill_arrays(const char *sequence); + /*@unused@*/ + INLINE PRIVATE int oldLoopEnergy(int i, int j, int p, int q, int type, int type_2); +-INLINE int LoopEnergy(int n1, int n2, int type, int type_2, ++int LoopEnergy(int n1, int n2, int type, int type_2, + int si1, int sj1, int sp1, int sq1); +-INLINE int HairpinE(int size, int type, int si1, int sj1, const char *string); ++int HairpinE(int size, int type, int si1, int sj1, const char *string); + + #define MAXSECTORS 500 /* dimension for a backtrack array */ + #define LOCALITY 0. /* locality parameter for base-pairs */ diff --git a/sci-biology/rnaplex/rnaplex-0.2.ebuild b/sci-biology/rnaplex/rnaplex-0.2.ebuild index 11de0007c..5892f4676 100644 --- a/sci-biology/rnaplex/rnaplex-0.2.ebuild +++ b/sci-biology/rnaplex/rnaplex-0.2.ebuild @@ -1,17 +1,24 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -MY_P=RNAplex-${PV} +inherit flag-o-matic +MY_P=RNAplex-${PV} DESCRIPTION="RNA-RNA interaction search" HOMEPAGE="http://www.bioinf.uni-leipzig.de/Software/RNAplex/"; SRC_URI="http://www.bioinf.uni-leipzig.de/Software/RNAplex/${MY_P}.tar.gz"; LICENSE="GPL-2" SLOT="0" -IUSE="" KEYWORDS="~amd64 ~x86" -S=${WORKDIR}/${MY_P} +S="${WORKDIR}/${MY_P}" + +PATCHES=( "${FILESDIR}"/${P}-inline.patch ) + +src_configure() { + append-cflags -fcommon + default +}
