commit: 499b1d05def066a51b3ba805ba42cc6eb3e46d21 Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> AuthorDate: Thu Oct 22 03:50:37 2020 +0000 Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> CommitDate: Thu Oct 22 03:50:43 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=499b1d05
sci-mathematics/gap-core: core package for GAP all tests for core package passing Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> profiles/package.mask | 5 + .../gap-core/files/gap-core-4.11.0-autoconf.patch | 136 ++++++++++++++++++++ sci-mathematics/gap-core/gap-core-4.11.0.ebuild | 140 +++++++++++++++++++++ sci-mathematics/gap-core/metadata.xml | 30 +++++ 4 files changed, 311 insertions(+) diff --git a/profiles/package.mask b/profiles/package.mask index 56b672d8d..f495d9865 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,3 +30,8 @@ #--- END OF EXAMPLES --- +# Aisha Tammy <gen...@aisha.cc> (2020-10-21) +# This ebuild is unmaintainable and the package +# is going to be split subpackages +# suggested replacement - sci-mathematics/gap-core +sci-mathematics/gap \ No newline at end of file diff --git a/sci-mathematics/gap-core/files/gap-core-4.11.0-autoconf.patch b/sci-mathematics/gap-core/files/gap-core-4.11.0-autoconf.patch new file mode 100644 index 000000000..ea3ebdfe6 --- /dev/null +++ b/sci-mathematics/gap-core/files/gap-core-4.11.0-autoconf.patch @@ -0,0 +1,136 @@ +diff --git a/Makefile.rules b/Makefile.rules +index c2971b2..3c04e8b 100644 +--- a/Makefile.rules ++++ b/Makefile.rules +@@ -483,20 +483,22 @@ clean: + + LTINSTALL=$(LIBTOOL) --mode=install $(INSTALL) + +-install: +- @echo "Error, 'make install' has not yet been implemented" +- exit 1 ++install: install-bin install-libgap install-headers install-gaproot + + install-bin: +- @echo "Warning, 'make install-bin' is incomplete" + $(INSTALL) -d -m 0755 $(DESTDIR)$(bindir) +- $(INSTALL) -m 0755 gap $(DESTDIR)$(bindir)/gap.real +- echo "!/bin/sh\nexec \"$(bindir)/gap.real\" -l \"$(datarootdir)/gap\" \"$@\"" > gap-wrapper.sh +- $(INSTALL) -m 0755 gap-wrapper.sh $(DESTDIR)$(bindir)/gap +- # TODO: make gac installable; this requires adjusting path in it, and +- # installing the libtool script generated by configure somewhere; and then +- # putting that path to it into gac) +- #$(INSTALL) gac $(DESTDIR)$(bindir) ++ $(INSTALL) -m 0755 gap $(DESTDIR)$(datarootdir)/gap ++ echo "!/bin/sh\nexec \"$(datarootdir)/gap\" -l \"$(datarootdir)/gap\" \"$@\"" > gap ++ $(INSTALL) -m 0755 gap $(DESTDIR)$(bindir) ++ sed -e "s:^abs_top_builddir=.*$:abs_top_builddir=\"$(datarootdir)/gap\":" \ ++ -e "s:^abs_top_srcdir=.*$:abs_top_srcdir=\"$(datarootdir)/gap\":" \ ++ -i gac ++ $(INSTALL) -m 0755 gac $(DESTDIR)$(bindir) ++ ++install-libgap: libgap.la ++ @echo "Warning, 'make install-libgap' is incomplete" ++ $(INSTALL) -d -m 0755 $(DESTDIR)$(libdir) ++ $(LTINSTALL) libgap.la $(DESTDIR)$(libdir) + + install-gaproot: + @echo "Warning, 'make install-gaproot' is incomplete" +@@ -538,11 +540,6 @@ install-headers: + $(INSTALL) -m 0644 $(srcdir)/src/hpc/*.h $(DESTDIR)$(includedir)/gap/hpc + # TODO: take care of config.h, this is difficult + +-install-libgap: libgap.la +- @echo "Warning, 'make install-libgap' is incomplete" +- $(INSTALL) -d -m 0755 $(DESTDIR)$(libdir) +- $(LTINSTALL) libgap.la $(DESTDIR)$(libdir) +- + + .PHONY: install install-bin install-gaproot install-headers install-libgap + +diff --git a/configure.ac b/configure.ac +index 938fcd3..b3b2340 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -6,6 +6,7 @@ AC_INIT([GAP], [4.dev], [supp...@gap-system.org], [gap], [https://www.gap-system + + AC_CONFIG_SRCDIR([src/gap.c]) + AC_CONFIG_AUX_DIR([cnf]) ++AC_CONFIG_MACRO_DIR([m4]) + + AC_CONFIG_HEADERS([gen/config.h:src/config.h.in]) + AC_CONFIG_COMMANDS([gen/stamp-h], [echo timestamp > gen/stamp-h]) +@@ -207,29 +208,41 @@ dnl User setting: Debug mode (off by default) + dnl + AC_ARG_ENABLE([debug], + [AS_HELP_STRING([--enable-debug], [enable debug mode])], +- [AC_DEFINE([GAP_KERNEL_DEBUG], [1], [define if building in debug mode]) +- AC_DEFINE([GAP_PRINT_BACKTRACE], [1], [to enable backtraces upon crashes])], ++ [], + [enable_debug=no] + ) + AC_MSG_CHECKING([whether to enable debug mode]) + AC_MSG_RESULT([$enable_debug]) + ++AS_IF([test "x$enable_debug" != "xno"], ++ [AC_DEFINE([GAP_KERNEL_DEBUG], [1], [define if building in debug mode]) ++ AC_DEFINE([GAP_PRINT_BACKTRACE], [1], [to enable backtraces upon crashes])], ++) ++ + AC_ARG_ENABLE([memory-checking], + [AS_HELP_STRING([--enable-memory-checking], [enable memory checking])], +- [AC_DEFINE([GAP_MEM_CHECK], [1], [define if building with memory checking])], ++ [], + [enable_memory_checking=no] + ) + AC_MSG_CHECKING([whether to enable memory checking]) + AC_MSG_RESULT([$enable_memory_checking]) + ++AS_IF([test "x$enable_memory_checking" != "xno"], ++ [AC_DEFINE([GAP_MEM_CHECK], [1], [define if building with memory checking])] ++) ++ + AC_ARG_ENABLE([valgrind], + [AS_HELP_STRING([--enable-valgrind], [enable valgrind extensions to GASMAN])], +- [AC_DEFINE([GAP_MEMORY_CANARY], [1], [define if building with valgrind extensions])], ++ [], + [enable_valgrind=no] + ) + AC_MSG_CHECKING([whether to enable valgrind extensions to GASMAN]) + AC_MSG_RESULT([$enable_valgrind]) + ++AS_IF([test "x$enable_valgrind" != "xno"], ++ [AC_DEFINE([GAP_MEMORY_CANARY], [1], [define if building with valgrind extensions])] ++) ++ + if test "x$enable_valgrind" != "xno" -a "x$enable_memory_checking" != "xno"; then + AC_MSG_ERROR([--enable-valgrind and --enable-memory-checking cannot be used at the same time]) + fi +@@ -549,10 +562,9 @@ AS_IF([test "x$with_gc" = xboehm], + # + # As a side benefit, users do not have to worry about installing dependencies. + +- BUILD_LIBATOMIC_OPS=yes +- LIBATOMIC_OPS_CPPFLAGS='-I${abs_builddir}/extern/install/libatomic_ops/include' +- LIBATOMIC_OPS_LDFLAGS='${abs_builddir}/extern/install/libatomic_ops/lib/libatomic_ops.la' +- LIBATOMIC_OPS_LIBS= ++ BUILD_LIBATOMIC_OPS=no ++ #PKG_CHECK_MODULES([LIBATOMIC_OPS], [atomic_ops]) ++ + AC_SUBST([BUILD_LIBATOMIC_OPS]) + AC_SUBST([LIBATOMIC_OPS_CPPFLAGS]) + AC_SUBST([LIBATOMIC_OPS_LDFLAGS]) +@@ -561,11 +573,8 @@ AS_IF([test "x$with_gc" = xboehm], + ATOMIC_OPS_CFLAGS=$LIBATOMIC_OPS_CPPFLAGS + ATOMIC_OPS_LIBS=$LIBATOMIC_OPS_LDFLAGS + +- +- BUILD_BOEHM_GC=yes +- BOEHM_GC_CPPFLAGS='-I${abs_builddir}/extern/install/gc/include' +- BOEHM_GC_LDFLAGS='${abs_builddir}/extern/install/gc/lib/libgc.la' +- BOEHM_GC_LIBS= ++ BUILD_BOEHM_GC=no ++ #PKG_CHECK_MODULES([BOEHM_GC], [bdw-gc]) + AC_SUBST([BUILD_BOEHM_GC]) + AC_SUBST([BOEHM_GC_CPPFLAGS]) + AC_SUBST([BOEHM_GC_LDFLAGS]) diff --git a/sci-mathematics/gap-core/gap-core-4.11.0.ebuild b/sci-mathematics/gap-core/gap-core-4.11.0.ebuild new file mode 100644 index 000000000..c4610cb98 --- /dev/null +++ b/sci-mathematics/gap-core/gap-core-4.11.0.ebuild @@ -0,0 +1,140 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +inherit autotools python-any-r1 + +DESCRIPTION="System for computational discrete algebra" +HOMEPAGE="https://www.gap-system.org/"; +SRC_URI="https://github.com/gap-system/gap/releases/download/v${PV}/gap-${PV}-core.tar.bz2 -> ${P}.tar.bz2 + https://github.com/gap-system/gap/releases/download/v${PV}/packages-required-v${PV}.tar.gz -> ${P}-packages.tar.gz +" +S="${WORKDIR}"/gap-${PV} + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64" +# broken HPC +IUSE="-boehm debug -hpc julia julia-gc memcheck valgrind" +REQUIRED_USE="valgrind? ( memcheck ) julia-gc? ( julia ) hpc? ( boehm )" + +RDEPEND+=" + dev-libs/gmp + net-libs/zeromq + sci-libs/cddlib + sys-libs/readline + sys-libs/zlib + julia? ( || ( + dev-lang/julia + dev-lang/julia-bin + ) ) + valgrind? ( dev-util/valgrind ) +" +DEPEND+="${RDEPEND}" +BDEPEND+="${PYTHON_DEPS}" + +PATCHES=( "${FILESDIR}"/${PN}-4.11.0-autoconf.patch ) + +pkg_setup() { + if use valgrind; then + elog "If you enable the use of valgrind duing building" + elog "be sure that you have enabled the proper flags" + elog "in gcc to support it:" + elog "https://wiki.gentoo.org/wiki/Debugging#Valgrind"; + fi +} + +src_unpack() { + default + mkdir -p "${S}"/pkg || die + mv "${WORKDIR}"/{GAPDoc*,primgrp*,SmallGrp*,transgrp*} "${S}"/pkg || die +} + +src_prepare() { + default + eautoreconf -f -i + + # use GNUmakefile + rm Makefile || die + + # make sure of no external gmp/zlib being build + # gap uses bundled libatomic_ops and boehm-gc + rm -rf extern || die + + # this test takes TOO long + rm tst/teststandard/opers/AutomorphismGroup.tst || die +} + +src_configure() { + local myconf=( + --enable-shared + --disable-static + --with-gmp + --with-zlib + --with-readline + --enable-popcnt + $(use_enable memcheck memory-checking) + $(use_enable valgrind) + $(use_enable hpc hpcgap) + $(use_enable debug) + $(use_with julia) + ) + # garbage collector settings + if use boehm; then + myconf+=( --with-gc=boehm ) + elif use julia-gc; then + myconf+=( --with-gc=julia ) + else + myconf+=( --with-gc=gasman ) + fi + + # only supporting amd64 builds + econf ${myconf[@]} ABI=64 +} + +src_test() { + emake testinstall testlibgap +} + +src_install() { + # upstream has no install function + # we try to simulate on as best as we can + + dodoc README{,.buildsys,.hpcgap}.md \ + CHANGES.md CITATION + + sed -e "s:^abs_top_builddir=.*$:abs_top_builddir=\"${EPREFIX}/usr/share/gap\":" \ + -e "s:^abs_top_srcdir=.*$:abs_top_srcdir=\"${EPREFIX}/usr/share/gap\":" \ + -i gac || die + dobin gac + + exeinto /usr/share/gap/ + doexe gap + + cat <<-EOF > gap.sh || die + \#!/bin/sh + exec "${EPREFIX}"/usr/share/gap/gap -l "${EPREFIX}"/usr/share/gap "\$@" + EOF + newbin gap.sh gap + + dolib.so .libs/libgap.so* + + dodir /usr/include/gap + cp -a src/*.h gen/*.h "${ED}"/usr/include/gap || die + if use hpc; then + dodir /usr/include/gap/hpc + cp -a src/hpc/*.h "${ED}"/usr/include/gap/hpc || die + fi + + cp -a doc grp lib tst libtool "${ED}"/usr/share/gap || die + + sed -e "s:${S}:${EPREFIX}/usr/share/gap:g" -i sysinfo.gap + insinto /usr/share/gap + doins sysinfo.gap* + + # remove objects and static lib files + find "${ED}" \( -name "*.o" -o -name "*.a" -o -name "*.la" \) \ + -delete || die +} diff --git a/sci-mathematics/gap-core/metadata.xml b/sci-mathematics/gap-core/metadata.xml new file mode 100644 index 000000000..a59ef9895 --- /dev/null +++ b/sci-mathematics/gap-core/metadata.xml @@ -0,0 +1,30 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>a.g.gro...@inp.nsk.su</email> + <name>Andrey Grozin</name> + </maintainer> + <maintainer type="project"> + <email>sci-mathemat...@gentoo.org</email> + <name>Gentoo Mathematics Project</name> + </maintainer> + <longdescription lang="en"> +Groups, Algorithms, Programming is a system for computational +discrete algebra, with particular emphasis on Computational Group +Theory. GAP provides a programming language, a library of thousands +of functions implementing algebraic algorithms written in the GAP +language as well as large data libraries of algebraic objects. GAP +is used in research and teaching for studying groups and their +representations, rings, vector spaces, algebras, combinatorial +structures, and more. +</longdescription> + <use> + <flag name="boehm">Use <pkg>dev-libs/boehm-gc</pkg> as garbage collector</flag> + <flag name="hpc">Build gap with multithreading and parallel process support</flag> + <flag name="julia">Build julia bindings</flag> + <flag name="julia-gc">Use the julia garbage collector</flag> + <flag name="memcheck">Enable memory checking</flag> + <flag name="valgrind">Build symbols to be used by valgrind</flag> + </use> +</pkgmetadata>
