[gentoo-commits] proj/sci:master commit in: dev-python/pynwb/files/, dev-python/pynwb/
commit: 5017407dd9e589abb913af53da82de7e487e6114 Author: Horea Christian chymera eu> AuthorDate: Sat Mar 25 03:07:12 2023 + Commit: Horea Christian gmail com> CommitDate: Sat Mar 25 03:07:12 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5017407d dev-python/pynwb: revbump for deprecated pkg_resources Signed-off-by: Horea Christian chymera.eu> .../df0f7ed71defb8d12a7ff72746b93211304c4d4b.patch | 54 ++ .../pynwb/files/pynwb-2.3.1-pkg_resources.patch| 54 ++ dev-python/pynwb/pynwb-2.3.1-r1.ebuild | 51 3 files changed, 159 insertions(+) diff --git a/dev-python/pynwb/files/df0f7ed71defb8d12a7ff72746b93211304c4d4b.patch b/dev-python/pynwb/files/df0f7ed71defb8d12a7ff72746b93211304c4d4b.patch new file mode 100644 index 0..bf496b900 --- /dev/null +++ b/dev-python/pynwb/files/df0f7ed71defb8d12a7ff72746b93211304c4d4b.patch @@ -0,0 +1,54 @@ +From df0f7ed71defb8d12a7ff72746b93211304c4d4b Mon Sep 17 00:00:00 2001 +From: rly +Date: Fri, 24 Mar 2023 10:17:13 -0700 +Subject: [PATCH] Fix deprecation warning with pkg_resources + +--- + src/pynwb/__init__.py | 14 +++--- + tests/back_compat/test_import_structure.py | 1 - + 2 files changed, 11 insertions(+), 4 deletions(-) + +diff --git a/src/pynwb/__init__.py b/src/pynwb/__init__.py +index 2df273d43..023cda237 100644 +--- a/src/pynwb/__init__.py b/src/pynwb/__init__.py +@@ -15,16 +15,24 @@ + import hdmf.common + + CORE_NAMESPACE = 'core' +-__core_ns_file_name = 'nwb.namespace.yaml' + + from .spec import NWBDatasetSpec, NWBGroupSpec, NWBNamespace # noqa E402 + from .validate import validate # noqa: F401, E402 + + + def __get_resources(): +-from pkg_resources import resource_filename ++try: ++from importlib.resources import files ++except ImportError: ++# TODO: Remove when python 3.9 becomes the new minimum ++from importlib_resources import files ++ ++__location_of_this_file = files(__name__) ++__core_ns_file_name = 'nwb.namespace.yaml' ++__schema_dir = 'nwb-schema/core' ++ + ret = dict() +-ret['namespace_path'] = os.path.join(resource_filename(__name__, 'nwb-schema/core'), __core_ns_file_name) ++ret['namespace_path'] = str(__location_of_this_file / __schema_dir / __core_ns_file_name) + return ret + + +diff --git a/tests/back_compat/test_import_structure.py b/tests/back_compat/test_import_structure.py +index dba11a48a..e5f931f5d 100644 +--- a/tests/back_compat/test_import_structure.py b/tests/back_compat/test_import_structure.py +@@ -34,7 +34,6 @@ def test_outer_import_structure(self): + "__TYPE_MAP", + "__builtins__", + "__cached__", +-"__core_ns_file_name", + "__doc__", + "__file__", + "__get_resources", diff --git a/dev-python/pynwb/files/pynwb-2.3.1-pkg_resources.patch b/dev-python/pynwb/files/pynwb-2.3.1-pkg_resources.patch new file mode 100644 index 0..bf496b900 --- /dev/null +++ b/dev-python/pynwb/files/pynwb-2.3.1-pkg_resources.patch @@ -0,0 +1,54 @@ +From df0f7ed71defb8d12a7ff72746b93211304c4d4b Mon Sep 17 00:00:00 2001 +From: rly +Date: Fri, 24 Mar 2023 10:17:13 -0700 +Subject: [PATCH] Fix deprecation warning with pkg_resources + +--- + src/pynwb/__init__.py | 14 +++--- + tests/back_compat/test_import_structure.py | 1 - + 2 files changed, 11 insertions(+), 4 deletions(-) + +diff --git a/src/pynwb/__init__.py b/src/pynwb/__init__.py +index 2df273d43..023cda237 100644 +--- a/src/pynwb/__init__.py b/src/pynwb/__init__.py +@@ -15,16 +15,24 @@ + import hdmf.common + + CORE_NAMESPACE = 'core' +-__core_ns_file_name = 'nwb.namespace.yaml' + + from .spec import NWBDatasetSpec, NWBGroupSpec, NWBNamespace # noqa E402 + from .validate import validate # noqa: F401, E402 + + + def __get_resources(): +-from pkg_resources import resource_filename ++try: ++from importlib.resources import files ++except ImportError: ++# TODO: Remove when python 3.9 becomes the new minimum ++from importlib_resources import files ++ ++__location_of_this_file = files(__name__) ++__core_ns_file_name = 'nwb.namespace.yaml' ++__schema_dir = 'nwb-schema/core' ++ + ret = dict() +-ret['namespace_path'] = os.path.join(resource_filename(__name__, 'nwb-schema/core'), __core_ns_file_name) ++ret['namespace_path'] = str(__location_of_this_file / __schema_dir / __core_ns_file_name) + return ret + + +diff --git a/tests/back_compat/test_import_structure.py b/tests/back_compat/test_import_structure.py +index dba11a48a..e5f931f5d 100644 +--- a/tests/back_compat/test_import_structure.py b/tests/back_compat/test_import_structure.py +@@ -34,7 +34,6 @@ def test_outer_import_structure(self): + "__TYPE_MAP", + "__builtins__", +
[gentoo-commits] proj/sci:master commit in: dev-python/pynwb/files/, dev-python/pynwb/
commit: 252693b1a06c119a2efe40661b957fb6d10c0ed5
Author: Andrew Ammerlaan gentoo org>
AuthorDate: Tue Jan 3 18:15:06 2023 +
Commit: Andrew Ammerlaan gentoo org>
CommitDate: Tue Jan 3 18:15:12 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=252693b1
dev-python/pynwb: treeclean
dep sci-libs/hdf5[ros3(-)] unavailable
Signed-off-by: Andrew Ammerlaan gentoo.org>
dev-python/pynwb/files/pynwb-2.0.0-versions.patch | 21 -
dev-python/pynwb/files/pynwb-2.1.0-versions.patch | 21 -
dev-python/pynwb/files/pynwb-2.2.0-versions.patch | 21 -
dev-python/pynwb/metadata.xml | 24 --
dev-python/pynwb/pynwb-2.0.1.ebuild | 39
dev-python/pynwb/pynwb-2.1.0-r1.ebuild| 43 -
dev-python/pynwb/pynwb-2.2.0.ebuild | 57 ---
7 files changed, 226 deletions(-)
diff --git a/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
deleted file mode 100644
index d09c50594..0
--- a/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-diff --git a/setup.py b/tmp/setup.py
-index 39e75824..f7948f64 100755
a/setup.py
-+++ b/setup.py
-@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
- schema_dir = 'nwb-schema/core'
-
- reqs = [
--'h5py>=2.9,<4',
--'hdmf>=3.1.1,<4',
--'numpy>=1.16,<1.22',
--'pandas>=1.0.5,<2',
--'python-dateutil>=2.7,<3',
-+'h5py',
-+'hdmf',
-+'numpy',
-+'pandas',
-+'python-dateutil',
- 'setuptools'
- ]
-
diff --git a/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
deleted file mode 100644
index 8c816d226..0
--- a/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-diff --git a/setup.py b/tmp/setup.py
-index 39e75824..f7948f64 100755
a/setup.py
-+++ b/setup.py
-@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
- schema_dir = 'nwb-schema/core'
-
- reqs = [
--'h5py>=2.10,<4',
--'hdmf>=3.3.2,<4',
--'numpy>=1.16,<1.23',
--'pandas>=1.0.5,<2',
--'python-dateutil>=2.7,<3',
-+'h5py',
-+'hdmf',
-+'numpy',
-+'pandas',
-+'python-dateutil',
- 'setuptools'
- ]
-
diff --git a/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
deleted file mode 100644
index 6141f629a..0
--- a/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-diff --git a/setup.py b/tmp/setup.py
-index 39e75824..f7948f64 100755
a/setup.py
-+++ b/setup.py
-@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
- schema_dir = 'nwb-schema/core'
-
- reqs = [
--'h5py>=2.10,<4',
--'hdmf>=3.4.2,<4',
--'numpy>=1.16,<1.24',
--'pandas>=1.1.5,<2',
--'python-dateutil>=2.7.3,<3',
-+'h5py',
-+'hdmf',
-+'numpy',
-+'pandas',
-+'python-dateutil',
- 'setuptools'
- ]
-
diff --git a/dev-python/pynwb/metadata.xml b/dev-python/pynwb/metadata.xml
deleted file mode 100644
index 1e30097b2..0
--- a/dev-python/pynwb/metadata.xml
+++ /dev/null
@@ -1,24 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd;>
-
-
- gen...@chymera.eu
- Horea Christian
-
-
- s...@gentoo.org
- Gentoo Science Project
-
-
- PyNWB is a Python package for working with NWB files. It
provides a
- high-level API for efficiently working with Neurodata stored in
the NWB
- format. Neurodata Without Borders: Neurophysiology (NWB:N) is a
project
- to develop a unified data format for cellular-based
neurophysiology
- data, focused on the dynamics of groups of neurons measured
under a
- large range of experimental conditions.
-
-
- pynwb
- NeurodataWithoutBorders/pynwb
-
-
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild
b/dev-python/pynwb/pynwb-2.0.1.ebuild
deleted file mode 100644
index 3fe21370f..0
--- a/dev-python/pynwb/pynwb-2.0.1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{8..10} )
-inherit distutils-r1
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb;
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- sci-libs/hdf5[ros3(-)]
- https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
-
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
-
[gentoo-commits] proj/sci:master commit in: dev-python/pynwb/files/, dev-python/pynwb/
commit: 299f323d9a54d449992ea9156fc0004d15cf934b
Author: Horea Christian chymera eu>
AuthorDate: Wed Nov 2 21:09:45 2022 +
Commit: Horea Christian gmail com>
CommitDate: Wed Nov 2 21:09:45 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=299f323d
dev-python/pynwb: add 2.2.0
Signed-off-by: Horea Christian chymera.eu>
dev-python/pynwb/files/pynwb-2.2.0-versions.patch | 21 +
dev-python/pynwb/pynwb-2.2.0.ebuild | 57 +++
2 files changed, 78 insertions(+)
diff --git a/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
new file mode 100644
index 0..6141f629a
--- /dev/null
+++ b/dev-python/pynwb/files/pynwb-2.2.0-versions.patch
@@ -0,0 +1,21 @@
+diff --git a/setup.py b/tmp/setup.py
+index 39e75824..f7948f64 100755
+--- a/setup.py
b/setup.py
+@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
+ schema_dir = 'nwb-schema/core'
+
+ reqs = [
+-'h5py>=2.10,<4',
+-'hdmf>=3.4.2,<4',
+-'numpy>=1.16,<1.24',
+-'pandas>=1.1.5,<2',
+-'python-dateutil>=2.7.3,<3',
++'h5py',
++'hdmf',
++'numpy',
++'pandas',
++'python-dateutil',
+ 'setuptools'
+ ]
+
diff --git a/dev-python/pynwb/pynwb-2.2.0.ebuild
b/dev-python/pynwb/pynwb-2.2.0.ebuild
new file mode 100644
index 0..6ea595a8f
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.2.0.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+inherit distutils-r1
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb;
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ sci-libs/hdf5[ros3(-)]
+ >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ "
+BDEPEND=""
+
+PATCHES=(
+ "${FILESDIR}/${P}-versions.patch"
+ )
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
+ tests/back_compat/test_read.py::TestReadOldVersions::test_read
+
tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_non_external_format
+
tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_nonmatch_starting_frame
+
tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data
+
tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data_construct_mode
+
tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format
+
tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format_construct_mode
+
tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_starting_frame
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
+
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
+)
+
+distutils_enable_tests pytest
[gentoo-commits] proj/sci:master commit in: dev-python/pynwb/files/, dev-python/pynwb/
commit: 5ec641ea8274723cbc1b13a0144201b3a6de2623
Author: Horea Christian chymera eu>
AuthorDate: Tue Jul 19 04:57:49 2022 +
Commit: Horea Christian gmail com>
CommitDate: Tue Jul 19 04:57:49 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5ec641ea
dev-python/pynwb: patched upstream versioncheck
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian chymera.eu>
dev-python/pynwb/files/pynwb-2.1.0-versions.patch | 21 +
.../{pynwb-2.1.0.ebuild => pynwb-2.1.0-r1.ebuild} | 4
2 files changed, 25 insertions(+)
diff --git a/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
new file mode 100644
index 0..8c816d226
--- /dev/null
+++ b/dev-python/pynwb/files/pynwb-2.1.0-versions.patch
@@ -0,0 +1,21 @@
+diff --git a/setup.py b/tmp/setup.py
+index 39e75824..f7948f64 100755
+--- a/setup.py
b/setup.py
+@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
+ schema_dir = 'nwb-schema/core'
+
+ reqs = [
+-'h5py>=2.10,<4',
+-'hdmf>=3.3.2,<4',
+-'numpy>=1.16,<1.23',
+-'pandas>=1.0.5,<2',
+-'python-dateutil>=2.7,<3',
++'h5py',
++'hdmf',
++'numpy',
++'pandas',
++'python-dateutil',
+ 'setuptools'
+ ]
+
diff --git a/dev-python/pynwb/pynwb-2.1.0.ebuild
b/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
similarity index 96%
rename from dev-python/pynwb/pynwb-2.1.0.ebuild
rename to dev-python/pynwb/pynwb-2.1.0-r1.ebuild
index a53c4bbb0..c24dae23a 100644
--- a/dev-python/pynwb/pynwb-2.1.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
@@ -25,6 +25,10 @@ RDEPEND="
"
BDEPEND=""
+PATCHES=(
+ "${FILESDIR}/${P}-versions.patch"
+ )
+
EPYTEST_DESELECT=(
# Reported upsream:
# https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
[gentoo-commits] proj/sci:master commit in: dev-python/pynwb/files/, dev-python/pynwb/
commit: 67e6080551c80d384ee79713470e20396317a8f1
Author: Horea Christian chymera eu>
AuthorDate: Mon Jan 31 08:15:27 2022 +
Commit: Horea Christian gmail com>
CommitDate: Mon Jan 31 08:15:27 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=67e60805
dev-python/pynwb: new package (DANDI stack)
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian chymera.eu>
dev-python/pynwb/ChangeLog| 6 +++
dev-python/pynwb/files/pynwb-2.0.0-versions.patch | 21 ++
dev-python/pynwb/metadata.xml | 20 ++
dev-python/pynwb/pynwb-2.0.0.ebuild | 46 ++
dev-python/pynwb/pynwb-2.0.0_p0.ebuild| 47 +++
5 files changed, 140 insertions(+)
diff --git a/dev-python/pynwb/ChangeLog b/dev-python/pynwb/ChangeLog
new file mode 100644
index 0..1eee46e49
--- /dev/null
+++ b/dev-python/pynwb/ChangeLog
@@ -0,0 +1,6 @@
+*pynwb-2.0.0_p0 (31 Jan 2022)
+
+ 31 Jan 2022; +files/pynwb-2.0.0-versions.patch,
+ +pynwb-2.0.0_p0.ebuild, pynwb-2.0.0.ebuild:
+ dev-python/pynwb: version bump and test skip linking skipped test reports on
+ upstream issue treacker
diff --git a/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
b/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
new file mode 100644
index 0..d09c50594
--- /dev/null
+++ b/dev-python/pynwb/files/pynwb-2.0.0-versions.patch
@@ -0,0 +1,21 @@
+diff --git a/setup.py b/tmp/setup.py
+index 39e75824..f7948f64 100755
+--- a/setup.py
b/setup.py
+@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
+ schema_dir = 'nwb-schema/core'
+
+ reqs = [
+-'h5py>=2.9,<4',
+-'hdmf>=3.1.1,<4',
+-'numpy>=1.16,<1.22',
+-'pandas>=1.0.5,<2',
+-'python-dateutil>=2.7,<3',
++'h5py',
++'hdmf',
++'numpy',
++'pandas',
++'python-dateutil',
+ 'setuptools'
+ ]
+
diff --git a/dev-python/pynwb/metadata.xml b/dev-python/pynwb/metadata.xml
new file mode 100644
index 0..99512b574
--- /dev/null
+++ b/dev-python/pynwb/metadata.xml
@@ -0,0 +1,20 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+
+ gen...@chymera.eu
+ Horea Christian
+
+
+ s...@gentoo.org
+ Gentoo Science Project
+
+
+ PyNWB is a Python package for working with NWB files. It
provides a
+ high-level API for efficiently working with Neurodata stored in
the NWB
+ format. Neurodata Without Borders: Neurophysiology (NWB:N) is a
project
+ to develop a unified data format for cellular-based
neurophysiology
+ data, focused on the dynamics of groups of neurons measured
under a
+ large range of experimental conditions.
+
+
diff --git a/dev-python/pynwb/pynwb-2.0.0.ebuild
b/dev-python/pynwb/pynwb-2.0.0.ebuild
new file mode 100644
index 0..b0294a4e0
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.0.0.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+inherit distutils-r1
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb;
+SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz;
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ sci-libs/hdf5[ros3]
+ dev-python/hdmf[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ "
+BDEPEND=""
+
+PATCHES=(
+ "${FILESDIR}/${P}-versions.patch"
+ )
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/dandi/dandischema/issues/87
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
+
tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
+ # Reported upstream and fixed in newer version:
+ #
https://github.com/NeurodataWithoutBorders/pynwb/issues/1412#issuecomment-934153799
+ tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_dandi_read
+ tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_read
+)
+
+distutils_enable_tests pytest
diff --git a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
