[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2023-01-14 Thread Horea Christian 
commit: cb58accf5ba16cf9c6847740da88a44b0b27eaaa
Author: Horea Christian  chymera  eu>
AuthorDate: Sat Jan 14 11:50:52 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Sat Jan 14 11:50:52 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb58accf

sci-biology/Fastaq: using PEP517

Signed-off-by: Horea Christian  chymera.eu>

 sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild 
b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
index 4edf7cb45..443fb3342 100644
--- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
+++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
@@ -4,6 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2023-01-14 Thread Horea Christian 
commit: 849f966b89371fd6d3b2428228452643f1469f91
Author: Horea Christian  chymera  eu>
AuthorDate: Sat Jan 14 11:21:02 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Sat Jan 14 11:21:10 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=849f966b

sci-biology/Fastaq: update EAPI and PYTHON_COMPAT

Signed-off-by: Horea Christian  chymera.eu>

 sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild 
b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
index 28ff526f6..e62cd5e8f 100644
--- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
+++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2023-01-14 Thread Horea Christian 
commit: 172812edacf51e665169bf46e083487be3f7e828
Author: Horea Christian  chymera  eu>
AuthorDate: Sat Jan 14 11:48:32 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Sat Jan 14 11:48:32 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=172812ed

sci-biology/Fastaq: using pytest

Signed-off-by: Horea Christian  chymera.eu>

 sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild 
b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
index e62cd5e8f..4edf7cb45 100644
--- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
+++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
@@ -15,4 +15,6 @@ LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64"
 
-distutils_enable_tests nose
+distutils_enable_tests pytest
+# Nominally upstream still uses nose, though it does not encumber us, and 
tests pass:
+# https://github.com/sanger-pathogens/Fastaq/issues/84

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2021-02-13 Thread Andrew Ammerlaan 
commit: de0b0d0f14a82ff95dbb339a60f5a532ea2014fa
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Sat Feb 13 10:41:10 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Sat Feb 13 10:41:10 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=de0b0d0f

sci-biology/Fastaq: add version 3.17.0, add tests

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 .../Fastaq/{Fastaq-.ebuild => Fastaq-3.17.0.ebuild}| 14 ++
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/sci-biology/Fastaq/Fastaq-.ebuild 
b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
similarity index 57%
rename from sci-biology/Fastaq/Fastaq-.ebuild
rename to sci-biology/Fastaq/Fastaq-3.17.0.ebuild
index 5f932f511..28ff526f6 100644
--- a/sci-biology/Fastaq/Fastaq-.ebuild
+++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild
@@ -1,20 +1,18 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python3_7 )
+PYTHON_COMPAT=( python3_{7,8,9} )
 
-inherit distutils-r1 git-r3
+inherit distutils-r1
 
 DESCRIPTION="Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers"
 HOMEPAGE="https://github.com/sanger-pathogens/Fastaq;
-EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git;
+SRC_URI="https://github.com/sanger-pathogens/Fastaq/archive/v${PV}.tar.gz -> 
${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
 
-DEPEND=""
-RDEPEND="${DEPEND}"
+distutils_enable_tests nose

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2021-02-12 Thread Sam James 
commit: 0a34d3de9c792858f7c57d6861391c10247d2e8b
Author: Sam James  gentoo  org>
AuthorDate: Fri Feb 12 21:41:36 2021 +
Commit: Sam James  gentoo  org>
CommitDate: Fri Feb 12 21:41:36 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a34d3de

sci-biology/Fastaq: drop obsolete python_targets_*

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Sam James  gentoo.org>

 sci-biology/Fastaq/Fastaq-.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/Fastaq/Fastaq-.ebuild 
b/sci-biology/Fastaq/Fastaq-.ebuild
index 3a99df177..5f932f511 100644
--- a/sci-biology/Fastaq/Fastaq-.ebuild
+++ b/sci-biology/Fastaq/Fastaq-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python3_3 python3_4 python3_5 python3_6 python3_7 )
+PYTHON_COMPAT=( python3_7 )
 
 inherit distutils-r1 git-r3

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2018-10-29 Thread Martin Mokrejs 
commit: 559bb60db84e5ef4a7b912b2fd7dba135d57b303
Author: Martin Mokrejs  fold  natur  cuni  cz>
AuthorDate: Mon Oct 29 14:23:35 2018 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Mon Oct 29 14:23:35 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=559bb60d

sci-biology/Fastaq: add python 3_{6,7}

Package-Manager: Portage-2.3.51, Repoman-2.3.10

 sci-biology/Fastaq/Fastaq-.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/Fastaq/Fastaq-.ebuild 
b/sci-biology/Fastaq/Fastaq-.ebuild
index 3544716c7..3a99df177 100644
--- a/sci-biology/Fastaq/Fastaq-.ebuild
+++ b/sci-biology/Fastaq/Fastaq-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python3_3 python3_4 python3_5 )
+PYTHON_COMPAT=( python3_3 python3_4 python3_5 python3_6 python3_7 )
 
 inherit distutils-r1 git-r3

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2016-09-23 Thread Martin Mokrejs 
commit: 913b84c00d810e7f8f1ca7eb7e4d049ac8903493
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Fri Sep 23 17:30:57 2016 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Fri Sep 23 17:30:57 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=913b84c0

sci-biology/Fastaq: add python_3_5, improve DESCRIPTION line

Package-Manager: portage-2.3.0

 sci-biology/Fastaq/Fastaq-.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/Fastaq/Fastaq-.ebuild 
b/sci-biology/Fastaq/Fastaq-.ebuild
index 9acd60e..f931027 100644
--- a/sci-biology/Fastaq/Fastaq-.ebuild
+++ b/sci-biology/Fastaq/Fastaq-.ebuild
@@ -4,11 +4,11 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python3_3 python3_4 )
+PYTHON_COMPAT=( python3_3 python3_4 python3_5 )
 
 inherit distutils-r1 git-r3
 
-DESCRIPTION="Python3 script to manipulate FASTA/Q files plus API for 
developers"
+DESCRIPTION="Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers"
 HOMEPAGE="https://github.com/sanger-pathogens/Fastaq;
 EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git;

[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/

2016-04-10 Thread Martin Mokrejs 
commit: ec37fad877f9e8a8d529a968629aaba44cb0e774
Author: Martin Mokrejš  fold  natur  cuni  cz>
AuthorDate: Sun Apr 10 13:17:21 2016 +
Commit: Martin Mokrejs  fold  natur  cuni  cz>
CommitDate: Sun Apr 10 13:17:21 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec37fad8

sci-biology/Fastaq: new package

Package-Manager: portage-2.2.28

 sci-biology/Fastaq/Fastaq-.ebuild | 21 +
 sci-biology/Fastaq/metadata.xml   | 12 
 2 files changed, 33 insertions(+)

diff --git a/sci-biology/Fastaq/Fastaq-.ebuild 
b/sci-biology/Fastaq/Fastaq-.ebuild
new file mode 100644
index 000..9acd60e
--- /dev/null
+++ b/sci-biology/Fastaq/Fastaq-.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_3 python3_4 )
+
+inherit distutils-r1 git-r3
+
+DESCRIPTION="Python3 script to manipulate FASTA/Q files plus API for 
developers"
+HOMEPAGE="https://github.com/sanger-pathogens/Fastaq;
+EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git;
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/Fastaq/metadata.xml b/sci-biology/Fastaq/metadata.xml
new file mode 100644
index 000..f68a1b6
--- /dev/null
+++ b/sci-biology/Fastaq/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+  
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+  
+  
+sci-biol...@gentoo.org
+Gentoo Biology Project
+  
+