[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 63e2fa863298f1d0bc5c75d2d0b1586ccf7ab5f8
Author: Andrew Ammerlaan gentoo org>
AuthorDate: Tue May 2 12:24:18 2023 +
Commit: Andrew Ammerlaan gentoo org>
CommitDate: Tue May 2 12:24:18 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=63e2fa86
sci-biology/pyfaidx: disable py3.9
Signed-off-by: Andrew Ammerlaan gentoo.org>
sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild | 2 +-
sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
index f017998c0..bec223f6c 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
index 6f59187a6..14f557869 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1 pypi
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 18b0edc37e3cb752898e1abb17cd78af0ff94fd4
Author: Horea Christian chymera eu>
AuthorDate: Sat Mar 25 04:45:09 2023 +
Commit: Horea Christian gmail com>
CommitDate: Sat Mar 25 04:45:09 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=18b0edc3
sci-biology/pyfaidx: add 0.7.2.1
Signed-off-by: Horea Christian chymera.eu>
sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild | 24
1 file changed, 24 insertions(+)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
new file mode 100644
index 0..6f59187a6
--- /dev/null
+++ b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{9..11} )
+DISTUTILS_USE_PEP517=setuptools
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Efficient pythonic random access to fasta subsequences"
+HOMEPAGE="https://pypi.python.org/pypi/pyfaidx
https://github.com/mdshw5/pyfaidx;
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+# Test issues reported upstream:
+# https://github.com/mdshw5/pyfaidx/issues/208
+RESTRICT="test"
+
+REPEND="dev-python/six[${PYTHON_USEDEP}]"
+
+distutils_enable_tests pytest
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: b2a969579ee4e5cb208c7ca32211228065f11917
Author: Horea Christian chymera eu>
AuthorDate: Sat Mar 25 04:28:53 2023 +
Commit: Horea Christian gmail com>
CommitDate: Sat Mar 25 04:28:56 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b2a96957
sci-biology/pyfaidx: update EAPI 7 -> 8, tests no longer supported
Signed-off-by: Horea Christian chymera.eu>
sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild | 8
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
index be1990514..f017998c0 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{9..11} )
DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
@@ -19,4 +19,4 @@ IUSE=""
REPEND="dev-python/six[${PYTHON_USEDEP}]"
-distutils_enable_tests nose
+#distutils_enable_tests nose
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: e21b85a7db80813d98ab91c393f9387ed4480731
Author: Andrew Ammerlaan riseup net>
AuthorDate: Thu Dec 31 10:33:47 2020 +
Commit: Aisha Tammy aisha cc>
CommitDate: Thu Dec 31 12:04:10 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e21b85a7
sci-biology/pyfaidx: version bump, bump py_targets
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan riseup.net>
Signed-off-by: Aisha Tammy aisha.cc>
.../pyfaidx/{pyfaidx-0.5.9.1.ebuild => pyfaidx-0.5.9.2.ebuild} | 7 ---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
similarity index 69%
rename from sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
rename to sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
index 5c3bdaf6f..be1990514 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
@@ -3,17 +3,18 @@
EAPI=7
-PYTHON_COMPAT=( python3_{6..9} )
+PYTHON_COMPAT=( python3_{7..9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx;
+HOMEPAGE="https://pypi.python.org/pypi/pyfaidx
https://github.com/mdshw5/pyfaidx;
SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz ->
${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
IUSE=""
REPEND="dev-python/six[${PYTHON_USEDEP}]"
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 9866b0e789c6a7d9df37152fb0a028bc0b00b575
Author: Horea Christian chymera eu>
AuthorDate: Sun Sep 27 05:33:09 2020 +
Commit: Horea Christian gmail com>
CommitDate: Sun Sep 27 05:33:09 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9866b0e7
sci-biology/pyfaidx: version bump 0.5.9.1
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian chymera.eu>
.../{pyfaidx-0.4.8.1.ebuild => pyfaidx-0.5.9.1.ebuild} | 12
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
similarity index 55%
rename from sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
rename to sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
index abea85b56..5c3bdaf6f 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.5.9.1.ebuild
@@ -1,17 +1,21 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python3_{6..9} )
inherit distutils-r1
DESCRIPTION="Efficient pythonic random access to fasta subsequences"
HOMEPAGE="https://pypi.python.org/pypi/pyfaidx;
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz ->
${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
+
+REPEND="dev-python/six[${PYTHON_USEDEP}]"
+
+distutils_enable_tests nose
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 1e79f54b2107139fd7f33989e9e5b7cb9f857862
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Sat Feb 18 15:56:01 2017 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Sat Feb 18 15:56:01 2017 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1e79f54b
sci-biology/pyfaidx: version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/pyfaidx/{pyfaidx-0.3.8.ebuild => pyfaidx-0.4.8.1.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
similarity index 90%
rename from sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
rename to sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
index 90518452d..4fe385c98 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.4.8.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 11c9e067dd0b3bbdc7196a02d0fe6b949c799e25
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Mon Apr 13 06:15:10 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Mon Apr 13 06:15:10 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11c9e067
sci-biology/pyfaidx: Streamline ebuild
Package-Manager: portage-2.2.18
sci-biology/pyfaidx/ChangeLog| 3 +++
sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild | 3 ++-
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-biology/pyfaidx/ChangeLog b/sci-biology/pyfaidx/ChangeLog
index 7a0357f..98ad3f4 100644
--- a/sci-biology/pyfaidx/ChangeLog
+++ b/sci-biology/pyfaidx/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Apr 2015; Justin Lecher j...@gentoo.org pyfaidx-0.3.8.ebuild:
+ sci-biology/pyfaidx: Streamline ebuild
+
*pyfaidx-0.3.8 (12 Apr 2015)
12 Apr 2015; Michael Schubert mschu@gmail.com +metadata.xml,
diff --git a/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
index a4fc8b2..5a1e846 100644
--- a/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
+++ b/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
@@ -10,8 +10,9 @@ inherit distutils-r1
DESCRIPTION=Efficient pythonic random access to fasta subsequences
HOMEPAGE=https://pypi.python.org/pypi/pyfaidx;
-SRC_URI=mirror://pypi/p/pyfaidx/pyfaidx-${PV}.tar.gz
+SRC_URI=mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
LICENSE=MIT
SLOT=0
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
IUSE=
[gentoo-commits] proj/sci:master commit in: sci-biology/pyfaidx/
commit: 31adb1fc1c4e09d54aafbe836ef356112c17c16c
Author: layman layman AT localhost
AuthorDate: Sun Apr 12 16:02:14 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sun Apr 12 16:02:14 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=31adb1fc
sci-biology/pyfaidx: add pyfaidx
Package-Manager: portage-2.2.14-prefix
sci-biology/pyfaidx/ChangeLog| 9 +
sci-biology/pyfaidx/metadata.xml | 9 +
sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild | 17 +
3 files changed, 35 insertions(+)
diff --git a/sci-biology/pyfaidx/ChangeLog b/sci-biology/pyfaidx/ChangeLog
new file mode 100644
index 000..7a0357f
--- /dev/null
+++ b/sci-biology/pyfaidx/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/pyfaidx
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*pyfaidx-0.3.8 (12 Apr 2015)
+
+ 12 Apr 2015; Michael Schubert mschu@gmail.com +metadata.xml,
+ +pyfaidx-0.3.8.ebuild:
+ sci-biology/pyfaidx: add pyfaidx
diff --git a/sci-biology/pyfaidx/metadata.xml b/sci-biology/pyfaidx/metadata.xml
new file mode 100644
index 000..b7551a6
--- /dev/null
+++ b/sci-biology/pyfaidx/metadata.xml
@@ -0,0 +1,9 @@
+?xml version=1.0 encoding=UTF-8?
+!DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd;
+pkgmetadata
+ herdsci-biology/herd
+ maintainer
+emailmschu@gmail.com/email
+nameMichael Schubert/name
+ /maintainer
+/pkgmetadata
diff --git a/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
b/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
new file mode 100644
index 000..a4fc8b2
--- /dev/null
+++ b/sci-biology/pyfaidx/pyfaidx-0.3.8.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION=Efficient pythonic random access to fasta subsequences
+HOMEPAGE=https://pypi.python.org/pypi/pyfaidx;
+SRC_URI=mirror://pypi/p/pyfaidx/pyfaidx-${PV}.tar.gz
+
+LICENSE=MIT
+SLOT=0
+IUSE=
