commit: 307a9995cc3b29bd9726ad7ade53132c7c08f7fa Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sat Oct 27 20:03:05 2018 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Oct 27 20:07:56 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=307a9995
Sort keywords Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/MolBioLib/MolBioLib-5.ebuild | 2 +- sci-biology/bwa/bwa-0.7.17.ebuild | 2 +- sci-biology/gatk/gatk-3.8.1.ebuild | 2 +- sci-biology/gatk/gatk-9999.ebuild | 2 +- sci-biology/graf-bin/graf-bin-20171212.ebuild | 2 +- sci-biology/igv/igv-2.3.81.ebuild | 2 +- sci-biology/igv/igv-2.3.88.ebuild | 2 +- sci-biology/igv/igv-2.3.92.ebuild | 2 +- sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild | 2 +- sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild | 2 +- sci-biology/jtreeview/jtreeview-9999.ebuild | 2 +- sci-biology/libBigWig/libBigWig-0.4.0.ebuild | 2 +- sci-biology/libBigWig/libBigWig-9999.ebuild | 2 +- sci-biology/mira/mira-4.9.5.ebuild | 2 +- sci-biology/nxtrim/nxtrim-9999.ebuild | 2 +- sci-biology/oncotator/oncotator-1.9.2.0.ebuild | 2 +- sci-biology/phusion/phusion-2.1c.ebuild | 2 +- sci-biology/portrait/portrait-1.1.ebuild | 3 +-- sci-biology/pysamstats/pysamstats-0.24.2.ebuild | 2 +- sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild | 2 +- sci-libs/fast5/fast5-0.6.4.ebuild | 2 +- sci-libs/openblas/openblas-0.2.19-r1.ebuild | 2 +- sci-libs/openblas/openblas-0.2.20.ebuild | 2 +- 23 files changed, 23 insertions(+), 24 deletions(-) diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild index 2775e2faf..681758724 100644 --- a/sci-biology/MolBioLib/MolBioLib-5.ebuild +++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild @@ -9,7 +9,7 @@ SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.versi LICENSE="GPL-3" SLOT="0" -KEYWORDS="" +KEYWORDS="" # does not build IUSE="doc" # contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild index 9d4e13e57..429ba43e6 100644 --- a/sci-biology/bwa/bwa-0.7.17.ebuild +++ b/sci-biology/bwa/bwa-0.7.17.ebuild @@ -12,7 +12,7 @@ SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2" LICENSE="GPL-3" SLOT="0" IUSE="" -KEYWORDS="~amd64 ~x64-macos ~x86" +KEYWORDS="~amd64 ~x86 ~x64-macos" RDEPEND="dev-lang/perl" diff --git a/sci-biology/gatk/gatk-3.8.1.ebuild b/sci-biology/gatk/gatk-3.8.1.ebuild index c5e44747a..f46c1d322 100644 --- a/sci-biology/gatk/gatk-3.8.1.ebuild +++ b/sci-biology/gatk/gatk-3.8.1.ebuild @@ -18,7 +18,7 @@ EGIT_COMMIT="41147a655594c2aae6e2cad8462bd1648570b32b" LICENSE="MIT" SLOT="0" IUSE="" -KEYWORDS=""${W} # 134MB 608.21 MiB and download git ~amd64"" +KEYWORDS="~amd64" # 608.21 MiB git download and 134MB "${W}"/.m2 download COMMON_DEPS="" DEPEND=" diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild index 83149fb0f..fc9db8986 100644 --- a/sci-biology/gatk/gatk-9999.ebuild +++ b/sci-biology/gatk/gatk-9999.ebuild @@ -21,7 +21,7 @@ EGIT_CLONE_TYPE="mirror" LICENSE="BSD-3" # since gatk-4 SLOT="0" IUSE="" -KEYWORDS=""${W} # 134MB 148.19 MB and download git" +KEYWORDS="" # 148.19 MB git download and 134MB "${W}"/.m2 download COMMON_DEPS="" # gatk-4 needs java-1.8 diff --git a/sci-biology/graf-bin/graf-bin-20171212.ebuild b/sci-biology/graf-bin/graf-bin-20171212.ebuild index 710eb5595..93d554892 100644 --- a/sci-biology/graf-bin/graf-bin-20171212.ebuild +++ b/sci-biology/graf-bin/graf-bin-20171212.ebuild @@ -12,7 +12,7 @@ SRC_URI="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GR LICENSE="public-domain" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="~amd64" # 64bit exe only IUSE="" DEPEND="" diff --git a/sci-biology/igv/igv-2.3.81.ebuild b/sci-biology/igv/igv-2.3.81.ebuild index b870b0e98..5fabefeb3 100644 --- a/sci-biology/igv/igv-2.3.81.ebuild +++ b/sci-biology/igv/igv-2.3.81.ebuild @@ -26,7 +26,7 @@ HOMEPAGE="http://www.broadinstitute.org/igv/"; LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="" +KEYWORDS="" # igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionPanel.java:222: error: cannot access PublicCloneable # actually more exactly the COMMON_DEPS should contain: # >=dev-java/commons-compress-1.11 # use bundled library until dev-java/commons-compress is bumped, see bug #591696 diff --git a/sci-biology/igv/igv-2.3.88.ebuild b/sci-biology/igv/igv-2.3.88.ebuild index b870b0e98..8011ea888 100644 --- a/sci-biology/igv/igv-2.3.88.ebuild +++ b/sci-biology/igv/igv-2.3.88.ebuild @@ -26,7 +26,7 @@ HOMEPAGE="http://www.broadinstitute.org/igv/"; LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="" +KEYWORDS="" # see upstream issue #332 # actually more exactly the COMMON_DEPS should contain: # >=dev-java/commons-compress-1.11 # use bundled library until dev-java/commons-compress is bumped, see bug #591696 diff --git a/sci-biology/igv/igv-2.3.92.ebuild b/sci-biology/igv/igv-2.3.92.ebuild index b870b0e98..8011ea888 100644 --- a/sci-biology/igv/igv-2.3.92.ebuild +++ b/sci-biology/igv/igv-2.3.92.ebuild @@ -26,7 +26,7 @@ HOMEPAGE="http://www.broadinstitute.org/igv/"; LICENSE="LGPL-2.1" SLOT="0" IUSE="" -KEYWORDS="" +KEYWORDS="" # see upstream issue #332 # actually more exactly the COMMON_DEPS should contain: # >=dev-java/commons-compress-1.11 # use bundled library until dev-java/commons-compress is bumped, see bug #591696 diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild index 345c4eaf6..365c534bf 100644 --- a/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild +++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild @@ -16,7 +16,7 @@ SRC_URI=" LICENSE="GPL-2" SLOT="0" -KEYWORDS="" +KEYWORDS="" # src_install is wrong somehow, TreeView.jar does not start IUSE="" DEPEND=" diff --git a/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild b/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild index fab52dbd7..f1e58af01 100644 --- a/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild +++ b/sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild @@ -17,7 +17,7 @@ SRC_URI=" LICENSE="GPL-2" SLOT="0" -KEYWORDS="" +KEYWORDS="" # resulting java binary does not execute for me IUSE="" DEPEND=">virtual/jdk-1.5:* diff --git a/sci-biology/jtreeview/jtreeview-9999.ebuild b/sci-biology/jtreeview/jtreeview-9999.ebuild index 35d361230..0d7a1be51 100644 --- a/sci-biology/jtreeview/jtreeview-9999.ebuild +++ b/sci-biology/jtreeview/jtreeview-9999.ebuild @@ -12,7 +12,7 @@ EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git"; LICENSE="MIT" SLOT="0" -KEYWORDS="" +KEYWORDS="" # builds and executes fines IUSE="" DEPEND=">virtual/jdk-1.7:*" diff --git a/sci-biology/libBigWig/libBigWig-0.4.0.ebuild b/sci-biology/libBigWig/libBigWig-0.4.0.ebuild index 92c7fc505..bd71899f7 100644 --- a/sci-biology/libBigWig/libBigWig-0.4.0.ebuild +++ b/sci-biology/libBigWig/libBigWig-0.4.0.ebuild @@ -9,7 +9,7 @@ SRC_URI="https://github.com/dpryan79/libBigWig/archive/${PV}.tar.gz -> ${P}.tar. LICENSE="MIT" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="~amd64 ~x86" # https://github.com/dpryan79/libBigWig/issues/30 IUSE="" DEPEND="net-misc/curl" diff --git a/sci-biology/libBigWig/libBigWig-9999.ebuild b/sci-biology/libBigWig/libBigWig-9999.ebuild index a90395b0e..d470de250 100644 --- a/sci-biology/libBigWig/libBigWig-9999.ebuild +++ b/sci-biology/libBigWig/libBigWig-9999.ebuild @@ -11,7 +11,7 @@ EGIT_REPO_URI="https://github.com/dpryan79/libBigWig.git"; LICENSE="MIT" SLOT="0" -KEYWORDS="" +KEYWORDS="" # https://github.com/dpryan79/libBigWig/issues/30 IUSE="" DEPEND="net-misc/curl" diff --git a/sci-biology/mira/mira-4.9.5.ebuild b/sci-biology/mira/mira-4.9.5.ebuild index 5193618bc..7c888a5e7 100644 --- a/sci-biology/mira/mira-4.9.5.ebuild +++ b/sci-biology/mira/mira-4.9.5.ebuild @@ -21,7 +21,7 @@ S="${WORKDIR}"/"${PN}"-"${MY_PV}" SLOT="0" LICENSE="GPL-2" -KEYWORDS="~amd64 ~x86 ~x86-macos ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="doc" CDEPEND=" diff --git a/sci-biology/nxtrim/nxtrim-9999.ebuild b/sci-biology/nxtrim/nxtrim-9999.ebuild index 5c9da016c..9a12a0226 100644 --- a/sci-biology/nxtrim/nxtrim-9999.ebuild +++ b/sci-biology/nxtrim/nxtrim-9999.ebuild @@ -11,7 +11,7 @@ EGIT_REPO_URI="https://github.com/sequencing/NxTrim.git"; LICENSE="BSD-2" SLOT="0" -KEYWORDS="" +KEYWORDS="" # https://github.com/sequencing/NxTrim/issues/32 IUSE="" DEPEND="" diff --git a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild index 486c669b2..77f439b6d 100644 --- a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild +++ b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild @@ -12,7 +12,7 @@ SRC_URI="https://github.com/broadinstitute/oncotator/archive/v${PV}.tar.gz -> ${ LICENSE="oncotator" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="~amd64 ~x86" # breaks silently during install because of python syntax errors IUSE="" RESTRICT="fetch" diff --git a/sci-biology/phusion/phusion-2.1c.ebuild b/sci-biology/phusion/phusion-2.1c.ebuild index 54161ec02..7c72e31fd 100644 --- a/sci-biology/phusion/phusion-2.1c.ebuild +++ b/sci-biology/phusion/phusion-2.1c.ebuild @@ -14,7 +14,7 @@ LICENSE="all-rights-reserved" # temporarily placed value # Availability # Phusion is undergoing a rewrite of the code to make this a portable package. It will be made available free of charge to academic sites, but requires licensing for commercial use. For more information please contact the authors. SLOT="0" -KEYWORDS="" +KEYWORDS="" # compile process does not exit upon errors # one file does not compile # x86_64-pc-linux-gnu-gcc -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -o contigoverlap contigoverlap.o -lm # contigoverlap.o: In function `HashFasta': diff --git a/sci-biology/portrait/portrait-1.1.ebuild b/sci-biology/portrait/portrait-1.1.ebuild index fd50849cb..424ccfcd6 100644 --- a/sci-biology/portrait/portrait-1.1.ebuild +++ b/sci-biology/portrait/portrait-1.1.ebuild @@ -22,8 +22,7 @@ RDEPEND=" # was only tested with sci-libs/libsvm-2.84 src_install(){ - sed -e 's/ -//' -i *.pl || die "Failed to convert from DOS line endings to Unix" + sed -e 's/ //' -i *.pl || die "Failed to convert from DOS line endings to Unix" sed -e 's#/home/rtarrial/prog#/usr/bin#' -i *.pl dobin *.pl dodoc README.txt diff --git a/sci-biology/pysamstats/pysamstats-0.24.2.ebuild b/sci-biology/pysamstats/pysamstats-0.24.2.ebuild index b81dd558d..d6e1350a4 100644 --- a/sci-biology/pysamstats/pysamstats-0.24.2.ebuild +++ b/sci-biology/pysamstats/pysamstats-0.24.2.ebuild @@ -14,7 +14,7 @@ SRC_URI="mirror://pypi/p/${PN}/${P}.tar.gz" LICENSE="MIT" SLOT="0" -KEYWORDS="" +KEYWORDS="" # needs working pysam, see bug #645060 IUSE="" DEPEND="dev-python/cython diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild index 49865431b..238766eed 100644 --- a/sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild +++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild @@ -14,7 +14,7 @@ SRC_URI="https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v${PV}.t LICENSE="BSD-BroadInstitute" SLOT="0" -KEYWORDS="" +KEYWORDS="" # PERL5INC path is wrong when /usr/bin/Trinity is executed IUSE="" DEPEND="" diff --git a/sci-libs/fast5/fast5-0.6.4.ebuild b/sci-libs/fast5/fast5-0.6.4.ebuild index bae49ffe0..181c2e593 100644 --- a/sci-libs/fast5/fast5-0.6.4.ebuild +++ b/sci-libs/fast5/fast5-0.6.4.ebuild @@ -13,7 +13,7 @@ SRC_URI="https://github.com/mateidavid/fast5/archive/v${PV}.tar.gz -> ${P}.tar.g LICENSE="MIT" SLOT="0" -KEYWORDS="" +KEYWORDS="" # the install step is broken (python modules integration, upstream binary code) IUSE="" DEPEND=" diff --git a/sci-libs/openblas/openblas-0.2.19-r1.ebuild b/sci-libs/openblas/openblas-0.2.19-r1.ebuild index 1bbbc4d8c..11b5deefb 100644 --- a/sci-libs/openblas/openblas-0.2.19-r1.ebuild +++ b/sci-libs/openblas/openblas-0.2.19-r1.ebuild @@ -14,7 +14,7 @@ SRC_URI="https://github.com/xianyi/OpenBLAS/tarball/v${PV} -> ${P}.tar.gz LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x64-macos ~x86 ~x86-macos ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x64-macos ~x86-linux ~x86-macos" IUSE="dynamic openmp static-libs threads" RDEPEND="" diff --git a/sci-libs/openblas/openblas-0.2.20.ebuild b/sci-libs/openblas/openblas-0.2.20.ebuild index 4a352163a..f65231aa7 100644 --- a/sci-libs/openblas/openblas-0.2.20.ebuild +++ b/sci-libs/openblas/openblas-0.2.20.ebuild @@ -13,7 +13,7 @@ SRC_URI="https://github.com/xianyi/OpenBLAS/tarball/v${PV} -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x64-macos ~x86 ~x86-macos ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x64-macos ~x86-linux ~x86-macos" IUSE="dynamic openmp static-libs threads" RDEPEND=""
