[gentoo-commits] proj/sci:master commit in: sci-libs/iRODS/
commit: c45a7b7ab3469fbd9df024fd8dc790d612f2d00c
Author: Andrew Ammerlaan gentoo org>
AuthorDate: Mon Jan 24 19:51:07 2022 +
Commit: Andrew Ammerlaan gentoo org>
CommitDate: Mon Jan 24 19:51:07 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c45a7b7a
sci-libs/iRODS: bump to 4.2.11
Finally the configure phase passes
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan gentoo.org>
sci-libs/iRODS/iRODS-4.2.11.ebuild | 76 ++
sci-libs/iRODS/iRODS-4.2.8.ebuild | 20 --
2 files changed, 76 insertions(+), 20 deletions(-)
diff --git a/sci-libs/iRODS/iRODS-4.2.11.ebuild
b/sci-libs/iRODS/iRODS-4.2.11.ebuild
new file mode 100644
index 0..849a7c509
--- /dev/null
+++ b/sci-libs/iRODS/iRODS-4.2.11.ebuild
@@ -0,0 +1,76 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake llvm
+
+MESSAGING_COMMIT="24c73702c88e94c3b159dac97fe7a0640dfc209d"
+
+DESCRIPTION="Integrated Rule Oriented Data System, a data management software"
+HOMEPAGE="https://irods.org";
+SRC_URI="
+ https://github.com/irods/irods/archive/${PV}.tar.gz -> ${P}.tar.gz
+
https://github.com/irods/irods_schema_messaging/archive/${MESSAGING_COMMIT}.tar.gz
-> ${P}_schema_messaging.tar.gz
+"
+S="${WORKDIR}/irods-${PV}"
+
+LICENSE="BSD"
+SLOT="0"
+# need the c++ version of avro
+KEYWORDS=""
+
+DEPEND="
+ app-arch/libarchive
+ dev-cpp/catch:0
+ dev-libs/avro-c
+ dev-libs/boost:=
+ dev-libs/jansson
+ dev-libs/json-c
+ dev-libs/libfmt
+ dev-libs/openssl
+ dev-libs/spdlog
+ sys-libs/libcxx
+ sys-libs/pam
+ net-libs/cppzmq
+ net-libs/zeromq
+"
+RDEPEND="${DEPEND}"
+BDEPEND="
+ sys-devel/clang
+"
+
+src_unpack() {
+ default
+ mv "${WORKDIR}/irods_schema_messaging-${MESSAGING_COMMIT}/v1"
"${S}/irods_schema_messaging/" || die
+}
+
+src_prepare() {
+ cmake_src_prepare
+ # use the correct lib dir
+ find . -name "CMakeLists.txt" -exec sed -i \
+ -e '/${IRODS_EXTERNALS_FULLPATH_.*}/s/\/lib\//\/lib64\//g' \
+ {} + || die
+}
+
+src_configure() {
+ local mycmakeargs=(
+ -DIRODS_EXTERNALS_FULLPATH_CLANG="$(get_llvm_prefix)"
+ -DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="$(get_llvm_prefix)"
+ -DIRODS_EXTERNALS_FULLPATH_ARCHIVE="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_AVRO="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_BOOST="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_CATCH2="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_FMT="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_ZMQ="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_JANSSON="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_SPDLOG="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_CPPZMQ="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_JSON="${EPREFIX}/usr"
+ -DIRODS_EXTERNALS_FULLPATH_NANODBC="${EPREFIX}/usr"
+ # pretend we are Arch, otherwise fatal error
+ -DIRODS_LINUX_DISTRIBUTION_NAME="arch"
+ -DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR="1"
+ )
+ cmake_src_configure
+}
diff --git a/sci-libs/iRODS/iRODS-4.2.8.ebuild
b/sci-libs/iRODS/iRODS-4.2.8.ebuild
deleted file mode 100644
index eba0c76e2..0
--- a/sci-libs/iRODS/iRODS-4.2.8.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake
-
-DESCRIPTION="Integrated Rule Oriented Data System, a data management software"
-HOMEPAGE="https://irods.org";
-SRC_URI="https://github.com/irods/irods/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
-BDEPEND="sys-devel/clang"
-
-S="${WORKDIR}/irods-${PV}"
[gentoo-commits] proj/sci:master commit in: sci-libs/iRODS/
commit: 9a6def2e92b50234870fb443c96f69933f4b1f84
Author: Andrew Ammerlaan riseup net>
AuthorDate: Sat Jan 30 12:33:12 2021 +
Commit: Andrew Ammerlaan riseup net>
CommitDate: Sat Jan 30 12:33:12 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9a6def2e
sci-libs/iRODS: version bump, EAPI bump
this is still a mess, it wants clang-6 in /opt/
and clang:6 is no longer in ::gentoo. But maybe
it can be patched?
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan riseup.net>
sci-libs/iRODS/{iRODS-4.2.0.ebuild => iRODS-4.2.8.ebuild} | 13 ++---
1 file changed, 6 insertions(+), 7 deletions(-)
diff --git a/sci-libs/iRODS/iRODS-4.2.0.ebuild
b/sci-libs/iRODS/iRODS-4.2.8.ebuild
similarity index 57%
rename from sci-libs/iRODS/iRODS-4.2.0.ebuild
rename to sci-libs/iRODS/iRODS-4.2.8.ebuild
index 244962491..eba0c76e2 100644
--- a/sci-libs/iRODS/iRODS-4.2.0.ebuild
+++ b/sci-libs/iRODS/iRODS-4.2.8.ebuild
@@ -1,21 +1,20 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-inherit cmake-utils
+inherit cmake
DESCRIPTION="Integrated Rule Oriented Data System, a data management software"
HOMEPAGE="https://irods.org";
-SRC_URI="https://github.com/irods/irods/archive/4.2.0.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/irods/irods/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS=""
-IUSE=""
-CDEPEND="sys-devel/clang"
DEPEND=""
RDEPEND="${DEPEND}"
+BDEPEND="sys-devel/clang"
-S="${WORKDIR}"/irods-"${PV}"
+S="${WORKDIR}/irods-${PV}"
[gentoo-commits] proj/sci:master commit in: sci-libs/iRODS/
commit: 16978af8e7bb6fc105fd2079543e1b74cf93e8b3
Author: Martin Mokrejs fold natur cuni cz>
AuthorDate: Sun Jul 7 18:31:07 2019 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Sun Jul 7 18:31:07 2019 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=16978af8
sci-libs/iRODS: drop the extraneous license file
It is just am ordinary 3-clause BSD license.
Package-Manager: Portage-2.3.67, Repoman-2.3.16
Signed-off-by: Martin Mokrejs fold.natur.cuni.cz>
sci-libs/iRODS/iRODS-4.2.0.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-libs/iRODS/iRODS-4.2.0.ebuild
b/sci-libs/iRODS/iRODS-4.2.0.ebuild
index f2b5d1067..244962491 100644
--- a/sci-libs/iRODS/iRODS-4.2.0.ebuild
+++ b/sci-libs/iRODS/iRODS-4.2.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -9,7 +9,7 @@ DESCRIPTION="Integrated Rule Oriented Data System, a data
management software"
HOMEPAGE="https://irods.org";
SRC_URI="https://github.com/irods/irods/archive/4.2.0.tar.gz -> ${P}.tar.gz"
-LICENSE="BSD-with-attribution"
+LICENSE="BSD"
SLOT="0"
KEYWORDS=""
IUSE=""
[gentoo-commits] proj/sci:master commit in: sci-libs/iRODS/
commit: e834ad1cbab55269760ea3f8047ae598c4b3bf1a
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Sun Apr 30 13:21:34 2017 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Sun Apr 30 13:21:34 2017 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e834ad1c
sci-libs/iRODS: skeleton for a new package
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-libs/iRODS/iRODS-4.2.0.ebuild | 21 +
sci-libs/iRODS/metadata.xml | 11 +++
2 files changed, 32 insertions(+)
diff --git a/sci-libs/iRODS/iRODS-4.2.0.ebuild
b/sci-libs/iRODS/iRODS-4.2.0.ebuild
new file mode 100644
index 0..f2b5d1067
--- /dev/null
+++ b/sci-libs/iRODS/iRODS-4.2.0.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Integrated Rule Oriented Data System, a data management software"
+HOMEPAGE="https://irods.org";
+SRC_URI="https://github.com/irods/irods/archive/4.2.0.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-with-attribution"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+CDEPEND="sys-devel/clang"
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/irods-"${PV}"
diff --git a/sci-libs/iRODS/metadata.xml b/sci-libs/iRODS/metadata.xml
new file mode 100644
index 0..49735ee17
--- /dev/null
+++ b/sci-libs/iRODS/metadata.xml
@@ -0,0 +1,11 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+
+sci-biol...@gentoo.org
+Gentoo Biology Project
+
+
+samtools
+
+
