[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 1d9d9f6cbf7e933c4fed1f4ec4e3183b1ea0f76c Author: Horea Christian chymera eu> AuthorDate: Mon Jan 22 14:39:15 2024 + Commit: Horea Christian gmail com> CommitDate: Mon Jan 22 14:39:15 2024 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1d9d9f6c sci-libs/nipype: add 1.8.6, drop 1.5.0 Signed-off-by: Horea Christian chymera.eu> .../{nipype-1.5.0.ebuild => nipype-1.8.6.ebuild} | 25 +++--- 1 file changed, 12 insertions(+), 13 deletions(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.8.6.ebuild similarity index 75% rename from sci-libs/nipype/nipype-1.5.0.ebuild rename to sci-libs/nipype/nipype-1.8.6.ebuild index 750c3ba05..88bc23395 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.8.6.ebuild @@ -3,6 +3,7 @@ EAPI=8 +DISTUTILS_USE_PEP517=setuptools PYTHON_COMPAT=( python3_{10..11} ) PYTHON_REQ_USE="threads(+),sqlite" @@ -16,7 +17,9 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="test" -RESTRICT="!test? ( test )" +# Tests fail with numpy import error: +# https://github.com/nipy/nipype/issues/3626 +RESTRICT="test" DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] @@ -28,30 +31,28 @@ DEPEND=" ${RDEPEND} ) " -# Dependency disabled as upstream test configuration which requires it fails -#dev-python/pytest-xdist[${PYTHON_USEDEP}] RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/click[${PYTHON_USEDEP}] dev-python/filelock[${PYTHON_USEDEP}] + dev-python/looseversion[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/packaging[${PYTHON_USEDEP}] dev-python/pydot[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/python-dateutil[${PYTHON_USEDEP}] - >=dev-python/rdflib-5.0.0[${PYTHON_USEDEP}] + dev-python/rdflib[${PYTHON_USEDEP}] dev-python/scipy[${PYTHON_USEDEP}] dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] + https://github.com/nipy/nipype/issues/3540 EPYTEST_DESELECT=( - nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor - nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor_variance_threshold_and_metadata - nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor nipype/interfaces/tests/test_io.py::test_s3datagrabber_communication - nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help ) python_test() {
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/, sci-libs/nipype/files/
commit: 1d9f52f78d06e93d2fa28efaff395e19c17f063a Author: Horea Christian chymera eu> AuthorDate: Mon Dec 11 15:59:30 2023 + Commit: Horea Christian gmail com> CommitDate: Mon Dec 11 15:59:30 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1d9f52f7 sci-libs/nipype: PEP517 fixes and revbump Signed-off-by: Horea Christian chymera.eu> .../nipype/files/nipype-1.8.4-no_etelemetry.patch | 50 ++ sci-libs/nipype/nipype-1.8.4-r1.ebuild | 1 + ...pype-1.8.4-r1.ebuild => nipype-1.8.4-r2.ebuild} | 5 ++- 3 files changed, 55 insertions(+), 1 deletion(-) diff --git a/sci-libs/nipype/files/nipype-1.8.4-no_etelemetry.patch b/sci-libs/nipype/files/nipype-1.8.4-no_etelemetry.patch new file mode 100644 index 0..b5c223422 --- /dev/null +++ b/sci-libs/nipype/files/nipype-1.8.4-no_etelemetry.patch @@ -0,0 +1,50 @@ +diff --git a/nipype/__init__.py b/nipype/__init__.py +index 06084e823..2e42dcbce 100644 +--- a/nipype/__init__.py b/nipype/__init__.py +@@ -73,23 +73,6 @@ from .interfaces import ( + ) + + +-def check_latest_version(raise_exception=False): +-""" +-Check for the latest version of the library. +- +-Parameters +--- +-raise_exception: bool +-Raise a RuntimeError if a bad version is being used +-""" +-import etelemetry +- +-logger = logging.getLogger("nipype.utils") +-return etelemetry.check_available_version( +-"nipy/nipype", __version__, logger, raise_exception +-) +- +- + # Run telemetry on import for interactive sessions, such as IPython, Jupyter notebooks, Python REPL + if config.getboolean("execution", "check_version"): + import __main__ +@@ -98,4 +81,4 @@ if config.getboolean("execution", "check_version"): + from .interfaces.base import BaseInterface + + if BaseInterface._etelemetry_version_data is None: +-BaseInterface._etelemetry_version_data = check_latest_version() or "n/a" ++BaseInterface._etelemetry_version_data = "n/a" +diff --git a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py +index c8099be63..f7770dbfc 100644 +--- a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py +@@ -183,10 +183,9 @@ class BaseInterface(Interface): + config.getboolean("execution", "check_version") + and "NIPYPE_NO_ET" not in os.environ + ): +-from ... import check_latest_version + + if BaseInterface._etelemetry_version_data is None: +-BaseInterface._etelemetry_version_data = check_latest_version() or "n/a" ++BaseInterface._etelemetry_version_data = "n/a" + + if not self.input_spec: + raise Exception("No input_spec in class: %s" % self.__class__.__name__) diff --git a/sci-libs/nipype/nipype-1.8.4-r1.ebuild b/sci-libs/nipype/nipype-1.8.4-r1.ebuild index 8214ccff4..7c2e801ff 100644 --- a/sci-libs/nipype/nipype-1.8.4-r1.ebuild +++ b/sci-libs/nipype/nipype-1.8.4-r1.ebuild @@ -3,6 +3,7 @@ EAPI=8 +DISTUTILS_USE_PEP517=setuptools PYTHON_COMPAT=( python3_{10..11} ) PYTHON_REQ_USE="threads(+),sqlite" diff --git a/sci-libs/nipype/nipype-1.8.4-r1.ebuild b/sci-libs/nipype/nipype-1.8.4-r2.ebuild similarity index 93% copy from sci-libs/nipype/nipype-1.8.4-r1.ebuild copy to sci-libs/nipype/nipype-1.8.4-r2.ebuild index 8214ccff4..4c3da70b3 100644 --- a/sci-libs/nipype/nipype-1.8.4-r1.ebuild +++ b/sci-libs/nipype/nipype-1.8.4-r2.ebuild @@ -3,6 +3,7 @@ EAPI=8 +DISTUTILS_USE_PEP517=setuptools PYTHON_COMPAT=( python3_{10..11} ) PYTHON_REQ_USE="threads(+),sqlite" @@ -14,7 +15,7 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="~amd64 ~x86" IUSE="test" RESTRICT="!test? ( test )" @@ -45,10 +46,12 @@ RDEPEND=" PATCHES=( "${FILESDIR}/${PN}-1.8.4-dependency_compatibility.patch" + "${FILESDIR}/${PN}-1.8.4-no_etelemetry.patch" ) src_prepare() { # Remove etelemetry + # Doing this separately since the file is affected by another patch. sed -i '/"etelemetry/d' nipype/info.py requirements.txt || die # Mark failing tests
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 9c8ae0f75d601b13d193cb0bfd7422498fb38f74 Author: Horea Christian chymera eu> AuthorDate: Tue May 2 23:54:32 2023 + Commit: Horea Christian gmail com> CommitDate: Tue May 2 23:54:32 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9c8ae0f7 sci-libs/nipype: enable py3.11 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild| 4 ++-- sci-libs/nipype/nipype-1.8.4-r1.ebuild | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index b590f1095..750c3ba05 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-1.8.4-r1.ebuild b/sci-libs/nipype/nipype-1.8.4-r1.ebuild index d70509ce1..8214ccff4 100644 --- a/sci-libs/nipype/nipype-1.8.4-r1.ebuild +++ b/sci-libs/nipype/nipype-1.8.4-r1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 1c2d9c184a6d79f1308b5b2ce3b39bca76a8fce9 Author: Horea Christian chymera eu> AuthorDate: Thu Apr 6 18:48:08 2023 + Commit: Horea Christian gmail com> CommitDate: Thu Apr 6 18:48:08 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c2d9c18 sci-libs/nipype: dependency update Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/{nipype-1.8.4.ebuild => nipype-1.8.4-r1.ebuild} | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-1.8.4.ebuild b/sci-libs/nipype/nipype-1.8.4-r1.ebuild similarity index 97% rename from sci-libs/nipype/nipype-1.8.4.ebuild rename to sci-libs/nipype/nipype-1.8.4-r1.ebuild index 2bb45c676..d70509ce1 100644 --- a/sci-libs/nipype/nipype-1.8.4.ebuild +++ b/sci-libs/nipype/nipype-1.8.4-r1.ebuild @@ -14,7 +14,7 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="~amd64" IUSE="test" RESTRICT="!test? ( test )" @@ -31,12 +31,13 @@ DEPEND=" RDEPEND=" dev-python/click[${PYTHON_USEDEP}] - dev-python/rdflib[${PYTHON_USEDEP}] dev-python/filelock[${PYTHON_USEDEP}] + dev-python/looseversion[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/packaging[${PYTHON_USEDEP}] dev-python/pydot[${PYTHON_USEDEP}] dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/rdflib[${PYTHON_USEDEP}] dev-python/scipy[${PYTHON_USEDEP}] dev-python/simplejson[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: ef43395ed6f8329c744a2fa55bba10f3637cd259 Author: Horea Christian chymera eu> AuthorDate: Thu Feb 16 08:30:38 2023 + Commit: Horea Christian gmail com> CommitDate: Thu Feb 16 08:30:38 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef43395e sci-libs/nipype: updated HOMEPAGE Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 2 +- sci-libs/nipype/nipype-1.8.4.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index abf8c0aa8..b590f1095 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -9,7 +9,7 @@ PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; +HOMEPAGE="https://nipype.readthedocs.io/; SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" diff --git a/sci-libs/nipype/nipype-1.8.4.ebuild b/sci-libs/nipype/nipype-1.8.4.ebuild index e1172c4c5..2bb45c676 100644 --- a/sci-libs/nipype/nipype-1.8.4.ebuild +++ b/sci-libs/nipype/nipype-1.8.4.ebuild @@ -9,7 +9,7 @@ PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; +HOMEPAGE="https://nipype.readthedocs.io/; SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/files/, sci-libs/nipype/
commit: 34adca35bfa7ee9e22c7456989b67c732a9bb511 Author: Horea Christian chymera eu> AuthorDate: Sun Jan 29 13:36:16 2023 + Commit: Horea Christian gmail com> CommitDate: Sun Jan 29 13:36:16 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=34adca35 sci-libs/nipype: version bump 1.8.4 Signed-off-by: Horea Christian chymera.eu> .../nipype-1.8.4-dependency_compatibility.patch| 575 + sci-libs/nipype/nipype-1.8.4.ebuild| 92 2 files changed, 667 insertions(+) diff --git a/sci-libs/nipype/files/nipype-1.8.4-dependency_compatibility.patch b/sci-libs/nipype/files/nipype-1.8.4-dependency_compatibility.patch new file mode 100644 index 0..9811139e7 --- /dev/null +++ b/sci-libs/nipype/files/nipype-1.8.4-dependency_compatibility.patch @@ -0,0 +1,575 @@ +From a31870d0f9dc0e774f1cf9d18351586f78ecb252 Mon Sep 17 00:00:00 2001 +From: Chris Markiewicz +Date: Sat, 28 Jan 2023 08:11:54 -0500 +Subject: [PATCH 1/9] FIX: Set dtypes for integer test images + +NiBabel 4 began warning that int64 images would error, and NiBabel 5 +began erroring if not passed an explicit dtype or header. + +We don't need int64 images, just set some sensible dtypes. +--- + nipype/algorithms/tests/test_ErrorMap.py | 2 +- + nipype/algorithms/tests/test_TSNR.py | 3 ++- + nipype/algorithms/tests/test_metrics.py | 2 +- + 3 files changed, 4 insertions(+), 3 deletions(-) + +diff --git a/nipype/algorithms/tests/test_ErrorMap.py b/nipype/algorithms/tests/test_ErrorMap.py +index 98f05d8e17..adac507bad 100644 +--- a/nipype/algorithms/tests/test_ErrorMap.py b/nipype/algorithms/tests/test_ErrorMap.py +@@ -17,7 +17,7 @@ def test_errormap(tmpdir): + volume1 = np.array([[[2.0, 8.0], [1.0, 2.0]], [[1.0, 9.0], [0.0, 3.0]]]) + # Alan Turing's birthday + volume2 = np.array([[[0.0, 7.0], [2.0, 3.0]], [[1.0, 9.0], [1.0, 2.0]]]) +-mask = np.array([[[1, 0], [0, 1]], [[1, 0], [0, 1]]]) ++mask = np.array([[[1, 0], [0, 1]], [[1, 0], [0, 1]]], dtype=np.uint8) + + img1 = nb.Nifti1Image(volume1, np.eye(4)) + img2 = nb.Nifti1Image(volume2, np.eye(4)) +diff --git a/nipype/algorithms/tests/test_TSNR.py b/nipype/algorithms/tests/test_TSNR.py +index 26c1019b63..320bec8ab2 100644 +--- a/nipype/algorithms/tests/test_TSNR.py b/nipype/algorithms/tests/test_TSNR.py +@@ -131,5 +131,6 @@ def assert_unchanged(self, expected_ranges): + [ + [[[2, 4, 3, 9, 1], [3, 6, 4, 7, 4]], [[8, 3, 4, 6, 2], [4, 0, 4, 4, 2]]], + [[[9, 7, 5, 5, 7], [7, 8, 4, 8, 4]], [[0, 4, 7, 1, 7], [6, 8, 8, 8, 7]]], +-] ++], ++dtype=np.int16, + ) +diff --git a/nipype/algorithms/tests/test_metrics.py b/nipype/algorithms/tests/test_metrics.py +index ad7502992e..3652fc2ce5 100644 +--- a/nipype/algorithms/tests/test_metrics.py b/nipype/algorithms/tests/test_metrics.py +@@ -45,7 +45,7 @@ def test_fuzzy_overlap(tmpdir): + + # Just considering the mask, the central pixel + # that raised the index now is left aside. +-data = np.zeros((3, 3, 3), dtype=int) ++data = np.zeros((3, 3, 3), dtype=np.uint8) + data[0, 0, 0] = 1 + data[2, 2, 2] = 1 + nb.Nifti1Image(data, np.eye(4)).to_filename("mask.nii.gz") + +From 443492e82f3b197ad739cb244912ced652853a8d Mon Sep 17 00:00:00 2001 +From: Chris Markiewicz +Date: Sat, 28 Jan 2023 08:43:07 -0500 +Subject: [PATCH 2/9] FIX: Coerce depidx to lil_matrix + +--- + nipype/pipeline/plugins/base.py | 18 +- + 1 file changed, 13 insertions(+), 5 deletions(-) + +diff --git a/nipype/pipeline/plugins/base.py b/nipype/pipeline/plugins/base.py +index a927b24686..3d600dda55 100644 +--- a/nipype/pipeline/plugins/base.py b/nipype/pipeline/plugins/base.py +@@ -21,6 +21,18 @@ + logger = logging.getLogger("nipype.workflow") + + ++def _graph_to_lil_matrix(graph, nodelist): ++"""Provide a sparse linked list matrix across various NetworkX versions""" ++import scipy.sparse as ssp ++ ++try: ++from networkx import to_scipy_sparse_array ++except ImportError: # NetworkX < 2.7 ++from networkx import to_scipy_sparse_matrix as to_scipy_sparse_array ++ ++return ssp.lil_matrix(to_scipy_sparse_array(graph, nodelist=nodelist, format="lil")) ++ ++ + class PluginBase(object): + """Base class for plugins.""" + +@@ -431,12 +443,8 @@ def _task_finished_cb(self, jobid, cached=False): + + def _generate_dependency_list(self, graph): + """Generates a dependency list for a list of graphs.""" +-import networkx as nx +- + self.procs, _ = topological_sort(graph) +-self.depidx = nx.to_scipy_sparse_matrix( +-graph, nodelist=self.procs, format="lil" +-) ++self.depidx = _graph_to_lil_matrix(graph, nodelist=self.procs) + self.refidx = self.depidx.astype(int) + self.proc_done = np.zeros(len(self.procs), dtype=bool) + self.proc_pending =
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 95178af611b210508c270926a62a25b1bd21733e Author: Horea Christian chymera eu> AuthorDate: Tue Aug 9 07:22:18 2022 + Commit: Horea Christian gmail com> CommitDate: Tue Aug 9 07:22:18 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=95178af6 sci-libs/nipype: purged dangling etelemetry requirement Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 757ff5cdb..f2a0815dc 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -52,7 +52,7 @@ PATCHES=( src_prepare() { # Remove etelemetry - sed -i '/"etelemetry/d' nipype/info.py || die + sed -i '/"etelemetry/d' nipype/info.py requirements.txt || die # Mark failing tests sed -i \
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: d05511bdde6d75507e3d7dbc7d6ac1030187832d Author: Horea Christian chymera eu> AuthorDate: Wed Jul 13 02:54:39 2022 + Commit: Horea Christian gmail com> CommitDate: Wed Jul 13 02:54:39 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d05511bd sci-libs/nipype: removed superfluous pytest arguments Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 58849547e..757ff5cdb 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -80,7 +80,7 @@ EPYTEST_DESELECT=( python_test() { # Setting environment variable to disable etelemetry version check: # https://github.com/nipy/nipype/issues/3196#issuecomment-605980044 - NIPYPE_NO_ET=1 epytest -vv + NIPYPE_NO_ET=1 epytest # Upstream test configuration fails #-c nipype/pytest.ini\ #--doctest-modules nipype\
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: d6fa4af73b3f624160410f0876d36280e541ac0e Author: Horea Christian chymera eu> AuthorDate: Tue Jul 12 18:19:45 2022 + Commit: Horea Christian gmail com> CommitDate: Tue Jul 12 18:19:45 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d6fa4af7 sci-libs/nipype: removed superfluous die call Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 67e244049..58849547e 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -80,8 +80,7 @@ EPYTEST_DESELECT=( python_test() { # Setting environment variable to disable etelemetry version check: # https://github.com/nipy/nipype/issues/3196#issuecomment-605980044 - NIPYPE_NO_ET=1 epytest -vv\ - || die + NIPYPE_NO_ET=1 epytest -vv # Upstream test configuration fails #-c nipype/pytest.ini\ #--doctest-modules nipype\
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/files/, sci-libs/nipype/
commit: 0c07f1c2cc4caec9042ea446d13ed857139f8caf Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 18:32:17 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 18:32:17 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0c07f1c2 sci-libs/nipype: EAPI and PYTHON_COMPAT bump, test fix Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> .../nipype/files/nipype-1.5.0-collections.patch| 28 ++ sci-libs/nipype/nipype-1.5.0.ebuild| 17 + 2 files changed, 41 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/files/nipype-1.5.0-collections.patch b/sci-libs/nipype/files/nipype-1.5.0-collections.patch new file mode 100644 index 0..e784ba48b --- /dev/null +++ b/sci-libs/nipype/files/nipype-1.5.0-collections.patch @@ -0,0 +1,28 @@ +--- a/nipype/interfaces/base/traits_extension.py 2020-06-03 11:08:30.0 -0400 b/nipype/interfaces/base/traits_extension.py 2022-07-11 14:09:31.847784312 -0400 +@@ -19,7 +19,10 @@ + (usually by Robert Kern). + + """ +-from collections import Sequence ++try: ++from collections import Sequence ++except ImportError: ++from collections.abc import Sequence + + # perform all external trait imports here + from traits import __version__ as traits_version +--- a/nipype/utils/misc.py 2020-06-03 11:08:30.0 -0400 b/nipype/utils/misc.py 2020-06-03 14:08:57.951408897 -0400 +@@ -6,7 +6,10 @@ + import os + import sys + import re +-from collections import Iterator ++try: ++from collections import Iterator ++except ImportError: ++from collections.abc import Iterator + from warnings import warn + + from distutils.version import LooseVersion diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 35792adbc..67e244049 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -47,6 +47,7 @@ RDEPEND=" PATCHES=( "${FILESDIR}/${P}"-version_check.patch + "${FILESDIR}/${P}"-collections.patch ) src_prepare() { @@ -68,10 +69,18 @@ python_install_all() { doenvd "${FILESDIR}/98nipype" } +EPYTEST_DESELECT=( + nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor + nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_compcor_variance_threshold_and_metadata + nipype/algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor + nipype/interfaces/tests/test_io.py::test_s3datagrabber_communication + nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help +) + python_test() { # Setting environment variable to disable etelemetry version check: # https://github.com/nipy/nipype/issues/3196#issuecomment-605980044 - NIPYPE_NO_ET=1 pytest -vv\ + NIPYPE_NO_ET=1 epytest -vv\ || die # Upstream test configuration fails #-c nipype/pytest.ini\
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: ad210701a5f482395b08d16aa2dd3760b264d9c8 Author: Horea Christian chymera eu> AuthorDate: Fri Jul 30 18:26:27 2021 + Commit: Horea Christian gmail com> CommitDate: Fri Jul 30 18:26:27 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad210701 sci-libs/nipype: PYTHON_COMPAT update Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 87975149e..35792adbc 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python3_{7..8} ) +PYTHON_COMPAT=( python3_{7..9} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 2497d3d59d9e67dcc67eb8687964e57d18b6993c Author: Andrew Ammerlaan riseup net> AuthorDate: Wed Jan 20 09:40:39 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Wed Jan 20 09:40:39 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2497d3d5 sci-libs/nipype: drop old failed REQUIRED_USE: py_targets_py3_7 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/nipype/nipype-1.1.1-r2.ebuild | 70 -- sci-libs/nipype/nipype-1.4.2.ebuild| 67 2 files changed, 137 deletions(-) diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild deleted file mode 100644 index 734fae8fc..0 --- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild +++ /dev/null @@ -1,70 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_7 ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" -RESTRICT="!test? ( test )" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/prov[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - ${RDEPEND} - ) -" -# Dependency disabled as upstream test configuration which requires it fails -#dev-python/pytest-xdist[${PYTHON_USEDEP}] - -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydot[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] -" - -src_prepare() { - sed -i\ - -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\ - -e "/'pytest-xdist',$/d"\ - -e "/'prov==%s' % PROV_VERSION,/d"\ - nipype/info.py || die - sed -i\ - -e "s/prov==1\.5\.0/prov/g"\ - requirements.txt rtd_requirements.txt || die - default -} - -python_test() { - pytest -vv\ - || die - # Upstream test configuration fails - #-c nipype/pytest.ini\ - #--doctest-modules nipype\ - #--cov nipype\ - #--cov-config .coveragerc\ - #--cov-report xml:cov.xml\ -} diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild deleted file mode 100644 index 1f91463b6..0 --- a/sci-libs/nipype/nipype-1.4.2.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_7 ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" -RESTRICT="!test? ( test )" - -DEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/prov[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - ${RDEPEND} - ) -" -# Dependency disabled as upstream test configuration which requires it fails -#dev-python/pytest-xdist[${PYTHON_USEDEP}] - -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/filelock[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydot[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] -" -#etelemetry and neurdflib - -src_prepare() { - sed -i \ - -e "/def test_no_et(tmp_path):/i...@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \ - nipype/tests/test_nipype.py || die - sed -i \ - -e "/def
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: eb5422aaa068d3c968908b43a8063de35bd43587 Author: Horea Christian chymera eu> AuthorDate: Thu Dec 24 11:03:57 2020 + Commit: Horea Christian gmail com> CommitDate: Thu Dec 24 11:03:57 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb5422aa sci-libs/nipype: conditional test restriction Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.1.1-r2.ebuild | 1 + sci-libs/nipype/nipype-1.4.2.ebuild| 1 + sci-libs/nipype/nipype-1.5.0.ebuild| 1 + 3 files changed, 3 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild index d8522c62f..734fae8fc 100644 --- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild @@ -16,6 +16,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="test" +RESTRICT="!test? ( test )" DEPEND=" dev-python/future[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild index a5b417283..1f91463b6 100644 --- a/sci-libs/nipype/nipype-1.4.2.ebuild +++ b/sci-libs/nipype/nipype-1.4.2.ebuild @@ -16,6 +16,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="test" +RESTRICT="!test? ( test )" DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 164116792..87975149e 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -16,6 +16,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="test" +RESTRICT="!test? ( test )" DEPEND=" dev-python/numpy[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: f0eddb25f3291918b16fdfb6336a32cd92d7c0a3 Author: Horea Christian chymera eu> AuthorDate: Wed Dec 23 08:06:51 2020 + Commit: Horea Christian gmail com> CommitDate: Wed Dec 23 08:06:51 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0eddb25 sci-libs/nipype: updated PYTHON_COMPAT Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.5.0.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index ab80fb93b..164116792 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_7 ) +PYTHON_COMPAT=( python3_{7..8} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: ec60cab9e5588cc9146e57bda2e47de1a0899121 Author: Horea Christian chymera eu> AuthorDate: Sun Sep 27 22:08:19 2020 + Commit: Horea Christian gmail com> CommitDate: Sun Sep 27 22:08:19 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec60cab9 sci-libs/nipype: PYTHON_COMPAT update Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.1.1-r2.ebuild | 2 +- sci-libs/nipype/nipype-1.4.2.ebuild| 2 +- sci-libs/nipype/nipype-1.5.0.ebuild| 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild index 528967695..d8522c62f 100644 --- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_7 ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild index dd1b5e1f0..a5b417283 100644 --- a/sci-libs/nipype/nipype-1.4.2.ebuild +++ b/sci-libs/nipype/nipype-1.4.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_7 ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-1.5.0.ebuild b/sci-libs/nipype/nipype-1.5.0.ebuild index 1c3357c1a..ab80fb93b 100644 --- a/sci-libs/nipype/nipype-1.5.0.ebuild +++ b/sci-libs/nipype/nipype-1.5.0.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_7 ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/files/, sci-libs/nipype/
commit: 7766d151243230173d21865e85dbf7c71853f8ad Author: Horea Christian chymera eu> AuthorDate: Fri Sep 25 09:26:39 2020 + Commit: Horea Christian gmail com> CommitDate: Fri Sep 25 09:26:39 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7766d151 sci-libs/nipype: version bump 1.{4,5}* and old version removal Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/files/98nipype | 1 + .../nipype/files/nipype-1.5.0-version_check.patch | 45 ++ sci-libs/nipype/nipype-1.1.1-r2.ebuild | 2 +- ...{nipype-1.1.1-r1.ebuild => nipype-1.4.2.ebuild} | 21 +- ...{nipype-1.1.1-r1.ebuild => nipype-1.5.0.ebuild} | 44 - 5 files changed, 92 insertions(+), 21 deletions(-) diff --git a/sci-libs/nipype/files/98nipype b/sci-libs/nipype/files/98nipype new file mode 100644 index 0..c848f7c2a --- /dev/null +++ b/sci-libs/nipype/files/98nipype @@ -0,0 +1 @@ +export NIPYPE_NO_ET=1 diff --git a/sci-libs/nipype/files/nipype-1.5.0-version_check.patch b/sci-libs/nipype/files/nipype-1.5.0-version_check.patch new file mode 100644 index 0..8b7f11c63 --- /dev/null +++ b/sci-libs/nipype/files/nipype-1.5.0-version_check.patch @@ -0,0 +1,45 @@ +From b4d57d7ca4359b0990636bbc6091c49706c6ff39 Mon Sep 17 00:00:00 2001 +From: Horea Christian +Date: Fri, 7 Aug 2020 01:12:38 -0400 +Subject: [PATCH] ENH: no more auto-failing on misparsed versions + +--- + nipype/interfaces/base/core.py | 18 ++ + 1 file changed, 18 insertions(+) + +diff --git a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py +index 82da393a84..1e626fe1b5 100644 +--- a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py +@@ -276,6 +276,15 @@ def _check_version_requirements(self, trait_object, raise_exception=True): + version = LooseVersion(str(self.version)) + for name in names: + min_ver = LooseVersion(str(trait_object.traits()[name].min_ver)) ++try: ++min_ver > version ++except TypeError: ++iflogger.warning( ++'Nipype is having issues parsing the package version ' ++f'for Trait {name} ({self.__class__.__name__})' ++f'You may want to check whether {version} is larger than {min_ver}' ++) ++continue + if min_ver > version: + unavailable_traits.append(name) + if not isdefined(getattr(trait_object, name)): +@@ -293,6 +302,15 @@ def _check_version_requirements(self, trait_object, raise_exception=True): + version = LooseVersion(str(self.version)) + for name in names: + max_ver = LooseVersion(str(trait_object.traits()[name].max_ver)) ++try: ++max_ver > version ++except TypeError: ++iflogger.warning( ++'Nipype is having issues parsing the package version ' ++f'for Trait {name} ({self.__class__.__name__})' ++f'You may want to check whether {version} is smaller than {max_ver}' ++) ++continue + if max_ver < version: + unavailable_traits.append(name) + if not isdefined(getattr(trait_object, name)): diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild index 39427865a..528967695 100644 --- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild @@ -25,7 +25,7 @@ DEPEND=" sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] - <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] ${RDEPEND} ) " diff --git a/sci-libs/nipype/nipype-1.1.1-r1.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild similarity index 71% copy from sci-libs/nipype/nipype-1.1.1-r1.ebuild copy to sci-libs/nipype/nipype-1.4.2.ebuild index 435268f9c..dd1b5e1f0 100644 --- a/sci-libs/nipype/nipype-1.1.1-r1.ebuild +++ b/sci-libs/nipype/nipype-1.4.2.ebuild @@ -18,14 +18,12 @@ KEYWORDS="~amd64 ~x86" IUSE="test" DEPEND=" - dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/prov[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] - <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] ${RDEPEND} ) " @@ -34,27 +32,30 @@ DEPEND=" RDEPEND="
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: bc44451d56ba7f057b2a476d23ebb6b32730c8ca Author: Horea Christian chymera eu> AuthorDate: Sun Apr 12 07:57:22 2020 + Commit: Horea Christian gmail com> CommitDate: Sun Apr 12 07:57:22 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc44451d sci-libs/nipype: revbump 1.1.1-r2 package supports newer prov Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.1.1-r2.ebuild | 69 ++ 1 file changed, 69 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild new file mode 100644 index 0..a83371092 --- /dev/null +++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/; +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] + ${RDEPEND} + ) +" +# Dependency disabled as upstream test configuration which requires it fails +#dev-python/pytest-xdist[${PYTHON_USEDEP}] + +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] +" + +src_prepare() { + sed -i\ + -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\ + -e "/'pytest-xdist',$/d"\ + -e "/'prov==%s' % PROV_VERSION,/d"\ + nipype/info.py || die + sed -i\ + -e "s/prov==1\.5\.0/prov/g"\ + requirements.txt rtd_requirements.txt || die + default +} + +python_test() { + pytest -vv\ + || die + # Upstream test configuration fails + #-c nipype/pytest.ini\ + #--doctest-modules nipype\ + #--cov nipype\ + #--cov-config .coveragerc\ + #--cov-report xml:cov.xml\ +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 4c04ec99ba702fcb718122050c008eaf5ad7fed3 Author: Horea Christian chymera eu> AuthorDate: Mon Mar 30 04:22:56 2020 + Commit: Horea Christian gmail com> CommitDate: Mon Mar 30 04:22:56 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4c04ec99 sci-libs/nipype: PYTHON_COMPAT 3_7 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-1.1.0.ebuild| 54 --- sci-libs/nipype/nipype-1.1.1-r1.ebuild | 30 +- sci-libs/nipype/nipype-.ebuild | 58 -- 3 files changed, 15 insertions(+), 127 deletions(-) diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild deleted file mode 100644 index f7c871659..0 --- a/sci-libs/nipype/nipype-1.1.0.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python{3_4,3_5,3_6} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] - ${RDEPEND} - ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - virtual/python-funcsigs[${PYTHON_USEDEP}] - " - -python_test() { - py.test -v --cov nipype\ - --cov-config .coveragerc\ - --cov-report xml:cov.xml\ - -c nipype/pytest.ini\ - --doctest-modules nipype\ - || die -} diff --git a/sci-libs/nipype/nipype-1.1.1-r1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild index 959ce9a63..1baca8aa8 100644 --- a/sci-libs/nipype/nipype-1.1.1-r1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python{3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_{6,7} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -20,19 +20,18 @@ IUSE="test" DEPEND=" dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-xdist[${PYTHON_USEDEP}] + <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] ${RDEPEND} ) - $(python_gen_cond_dep ' - dev-python/futures[${PYTHON_USEDEP}] - dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " +" +# Dependency disabled as upstream test configuration which requires it fails +#dev-python/pytest-xdist[${PYTHON_USEDEP}] + RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] @@ -44,8 +43,7 @@ RDEPEND=" dev-python/simplejson[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] - virtual/python-funcsigs[${PYTHON_USEDEP}] - " +" src_prepare() { sed -i\ @@ -56,10 +54,12 @@ src_prepare() { } python_test() { - py.test -v --cov nipype\ - --cov-config .coveragerc\ - --cov-report xml:cov.xml\ - -c nipype/pytest.ini\ - --doctest-modules nipype\ + pytest -vv\ || die + # Upstream test configuration fails + #-c nipype/pytest.ini\ + #--doctest-modules nipype\ + #--cov nipype\ + #--cov-config .coveragerc\ + #--cov-report xml:cov.xml\ } diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild deleted file mode 100644 index dc35f3e2e..0 ---
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 673d45cd51db11a16d243a60efd84d9b34055219 Author: Horea Christian chymera eu> AuthorDate: Tue Jan 7 21:47:07 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Jan 7 21:47:07 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=673d45cd sci-libs/nipype: deprecated old versions and PYTHON_COMPAT Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipype/nipype-0.12.0.ebuild | 38 --- sci-libs/nipype/nipype-0.12.1.ebuild | 38 --- sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 62 sci-libs/nipype/nipype-1.1.0.ebuild | 4 +- sci-libs/nipype/nipype-1.1.1-r1.ebuild | 4 +- sci-libs/nipype/nipype-.ebuild | 4 +- 6 files changed, 6 insertions(+), 144 deletions(-) diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild deleted file mode 100644 index 3b1397b0f..0 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( dev-python/mock[${PYTHON_USEDEP}] ) - " -RDEPEND=" - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - " - -python_test() { - nosetests -v || die -} diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild deleted file mode 100644 index 3b1397b0f..0 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( dev-python/mock[${PYTHON_USEDEP}] ) - " -RDEPEND=" - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - " - -python_test() { - nosetests -v || die -} diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild deleted file mode 100644 index ce6a52d9b..0 --- a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild +++ /dev/null @@ -1,62 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -COMMIT="7055313c91de52bf65518284b42df446466fe581" - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}] - test? ( - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " -RDEPEND=" - >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/funcsigs[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] -
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 8faafb557dc5d48fd31e8c09d648be4e188ec2bd Author: Horea Christian yandex com> AuthorDate: Wed May 1 16:36:41 2019 + Commit: Horea Christian gmail com> CommitDate: Wed May 1 16:36:41 2019 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8faafb55 sci-libs/nipype: revision for testing imports Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Horea Christian yandex.com> sci-libs/nipype/{nipype-1.1.1.ebuild => nipype-1.1.1-r1.ebuild} | 8 1 file changed, 8 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1-r1.ebuild similarity index 91% rename from sci-libs/nipype/nipype-1.1.1.ebuild rename to sci-libs/nipype/nipype-1.1.1-r1.ebuild index 70a0c37aa..e564b43c6 100644 --- a/sci-libs/nipype/nipype-1.1.1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1-r1.ebuild @@ -47,6 +47,14 @@ RDEPEND=" virtual/python-funcsigs[${PYTHON_USEDEP}] " +src_prepare() { + sed -i\ + -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\ + -e "/'pytest-xdist',$/d"\ + nipype/info.py || die + default +} + python_test() { py.test -v --cov nipype\ --cov-config .coveragerc\
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 652a29d0e2b7fb59f5f87d535f65534ae59af01e Author: Horea Christian yandex com> AuthorDate: Tue Jan 15 21:52:56 2019 + Commit: Horea Christian gmail com> CommitDate: Tue Jan 15 21:52:56 2019 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=652a29d0 sci-libs/nipype: Updated license, copyright, EAPI tests, and PYTHON_COMPAT Package-Manager: Portage-2.3.55, Repoman-2.3.12 Signed-off-by: Horea Christian yandex.com> sci-libs/nipype/nipype-.ebuild | 44 ++ 1 file changed, 21 insertions(+), 23 deletions(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 30c5a6493..df9829dbd 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 git-r3 @@ -13,48 +13,46 @@ HOMEPAGE="http://nipy.sourceforge.net/nipype/; SRC_URI="" EGIT_REPO_URI="https://github.com/nipy/nipype; -LICENSE="BSD" +LICENSE="Apache-2.0" SLOT="0" KEYWORDS="" IUSE="test" DEPEND=" dev-python/future[${PYTHON_USEDEP}] - dev-python/prov[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] dev-python/pytest-xdist[${PYTHON_USEDEP}] - ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + ${RDEPEND} + ) + $(python_gen_cond_dep ' + dev-python/futures[${PYTHON_USEDEP}] + dev-python/configparser[${PYTHON_USEDEP}]' python2_7) " RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}] - dev-python/funcsigs[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] dev-python/python-dateutil[${PYTHON_USEDEP}] - >=dev-python/traits-4.6.0[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/python-funcsigs[${PYTHON_USEDEP}] " -python_prepare_all() { - distutils-r1_python_prepare_all - EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]" - CORRECTED_REQUIRE="setup_requires=\['future'\]" - sed \ - -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ - -i setup.py \ - || die "sed setup.py" -} - python_test() { - nosetests -v || die + py.test -v --cov nipype\ + --cov-config .coveragerc\ + --cov-report xml:cov.xml\ + -c nipype/pytest.ini\ + --doctest-modules nipype\ + || die }
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 3ca9ada8d29959fbd498f409fb2590b601cfe0db Author: Horea Christian yandex com> AuthorDate: Tue Jan 15 21:41:45 2019 + Commit: Horea Christian gmail com> CommitDate: Tue Jan 15 21:43:21 2019 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3ca9ada8 sci-libs/nipype: added python_2* dependency Package-Manager: Portage-2.3.55, Repoman-2.3.12 Signed-off-by: Horea Christian yandex.com> sci-libs/nipype/nipype-1.1.1.ebuild | 6 -- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild index 8233d90b8..70a0c37aa 100644 --- a/sci-libs/nipype/nipype-1.1.1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -29,7 +29,9 @@ DEPEND=" dev-python/pytest-xdist[${PYTHON_USEDEP}] ${RDEPEND} ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + $(python_gen_cond_dep ' + dev-python/futures[${PYTHON_USEDEP}] + dev-python/configparser[${PYTHON_USEDEP}]' python2_7) " RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 69df78d87cd1afe2ea49875e2b415b2461fcca1c Author: Horea Christian yandex com> AuthorDate: Tue Jan 15 21:40:06 2019 + Commit: Horea Christian gmail com> CommitDate: Tue Jan 15 21:40:26 2019 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=69df78d8 sci-libs/nipype: Deprecated version Package-Manager: Portage-2.3.55, Repoman-2.3.12 Signed-off-by: Horea Christian yandex.com> sci-libs/nipype/nipype-0.11.0.ebuild | 34 -- 1 file changed, 34 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild deleted file mode 100644 index fc3e7c1fc..0 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}]" -RDEPEND=" - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}]" - -python_test() { - nosetests -v || die -}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: a1b038cf90a79a134f78f6cc1f3b93ed698bd22f Author: Horea Christian yandex com> AuthorDate: Wed Sep 26 17:30:49 2018 + Commit: Horea Christian gmail com> CommitDate: Wed Sep 26 17:30:49 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a1b038cf sci-libs/nipype: corrected dep Package-Manager: Portage-2.3.49, Repoman-2.3.10 sci-libs/nipype/nipype-1.1.1.ebuild | 1 + 1 file changed, 1 insertion(+) diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild index 84e7e852b..8233d90b8 100644 --- a/sci-libs/nipype/nipype-1.1.1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1.ebuild @@ -35,6 +35,7 @@ RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/python-dateutil[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 2348b81704f52c52934c2c92a16e5f47b579f0e8 Author: Horea Christian yandex com> AuthorDate: Fri Aug 10 22:07:40 2018 + Commit: Horea Christian gmail com> CommitDate: Fri Aug 10 22:07:40 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2348b817 sci-libs/nipype: added testing dep Package-Manager: Portage-2.3.45, Repoman-2.3.10 sci-libs/nipype/nipype-1.1.0.ebuild | 1 + sci-libs/nipype/nipype-1.1.1.ebuild | 1 + sci-libs/nipype/nipype-.ebuild | 3 ++- 3 files changed, 4 insertions(+), 1 deletion(-) diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild index 8c2713712..84e7e852b 100644 --- a/sci-libs/nipype/nipype-1.1.0.ebuild +++ b/sci-libs/nipype/nipype-1.1.0.ebuild @@ -26,6 +26,7 @@ DEPEND=" test? ( dev-python/mock[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] ${RDEPEND} ) $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild index 8c2713712..84e7e852b 100644 --- a/sci-libs/nipype/nipype-1.1.1.ebuild +++ b/sci-libs/nipype/nipype-1.1.1.ebuild @@ -26,6 +26,7 @@ DEPEND=" test? ( dev-python/mock[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] ${RDEPEND} ) $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index d1de488c9..30c5a6493 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -27,6 +27,7 @@ DEPEND=" test? ( dev-python/mock[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] ) $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) "
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 81bed4e668e2ee6425cc24189ceb2198a04f Author: Horea Christian yandex com> AuthorDate: Fri Aug 10 01:47:24 2018 + Commit: Horea Christian gmail com> CommitDate: Fri Aug 10 01:47:24 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=81bed4e6 sci-libs/nipype: version bump Package-Manager: Portage-2.3.45, Repoman-2.3.10 sci-libs/nipype/nipype-1.1.1.ebuild | 53 + 1 file changed, 53 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.1.ebuild b/sci-libs/nipype/nipype-1.1.1.ebuild new file mode 100644 index 0..8c2713712 --- /dev/null +++ b/sci-libs/nipype/nipype-1.1.1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/; +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + ${RDEPEND} + ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/python-funcsigs[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v --cov nipype\ + --cov-config .coveragerc\ + --cov-report xml:cov.xml\ + -c nipype/pytest.ini\ + --doctest-modules nipype\ + || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 5e2ddabad787cef77cf2197110355953c92aed5e Author: Horea Christian yandex com> AuthorDate: Thu Aug 9 15:45:45 2018 + Commit: Horea Christian gmail com> CommitDate: Thu Aug 9 15:45:45 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5e2ddaba sci-libs/nipype: version bump Package-Manager: Portage-2.3.44, Repoman-2.3.10 sci-libs/nipype/nipype-1.1.0.ebuild | 53 + 1 file changed, 53 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.0.ebuild b/sci-libs/nipype/nipype-1.1.0.ebuild new file mode 100644 index 0..8c2713712 --- /dev/null +++ b/sci-libs/nipype/nipype-1.1.0.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/; +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + ${RDEPEND} + ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/python-funcsigs[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v --cov nipype\ + --cov-config .coveragerc\ + --cov-report xml:cov.xml\ + -c nipype/pytest.ini\ + --doctest-modules nipype\ + || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 9ff9b8b3e82229189dffb17c17b394a701e38498 Author: Horea Christian yandex com> AuthorDate: Thu Aug 9 15:37:19 2018 + Commit: Horea Christian gmail com> CommitDate: Thu Aug 9 15:37:19 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ff9b8b3 sci-libs/nipype: EAPI and PYTHON_COMPAT bump Package-Manager: Portage-2.3.44, Repoman-2.3.10 sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild index 0fc65a5ce..ce6a52d9b 100644 --- a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild +++ b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild @@ -1,9 +1,9 @@ # Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -21,7 +21,7 @@ IUSE="test" DEPEND=" dev-python/future[${PYTHON_USEDEP}] - =dev-python/prov-1.5.0[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 2afd2fbdee20a8b42f5fc9bdc7d696774e567650 Author: Horea Christian yandex com> AuthorDate: Tue Jun 26 00:50:14 2018 + Commit: Horea Christian gmail com> CommitDate: Tue Jun 26 00:50:14 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2afd2fbd sci-libs/nipype: version bump Package-Manager: Portage-2.3.40, Repoman-2.3.9 sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild | 62 1 file changed, 62 insertions(+) diff --git a/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild new file mode 100644 index 0..0fc65a5ce --- /dev/null +++ b/sci-libs/nipype/nipype-0.14.0_pre20170830.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +COMMIT="7055313c91de52bf65518284b42df446466fe581" + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/; +SRC_URI="https://github.com/nipy/nipype/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + =dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/funcsigs[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + >=dev-python/traits-4.6.0[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + " + +S="${WORKDIR}/${PN}-${COMMIT}" + +python_prepare_all() { + distutils-r1_python_prepare_all + EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]" + CORRECTED_REQUIRE="setup_requires=\['future'\]" + sed \ + -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ + -i setup.py \ + || die "sed setup.py" +} + +python_test() { + nosetests -v || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 0a19ef7a59ffe05e7145b01550971d225dad748e Author: Horea Christian yandex com> AuthorDate: Mon Aug 7 09:04:55 2017 + Commit: Benda XU gentoo org> CommitDate: Fri Aug 25 04:03:45 2017 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a19ef7a sci-libs/nipype: added dependencies Package-Manager: Portage-2.3.6, Repoman-2.3.3 sci-libs/nipype/nipype-.ebuild | 3 +++ 1 file changed, 3 insertions(+) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index a58d9d220..d1de488c9 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -32,10 +32,13 @@ DEPEND=" " RDEPEND=" >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/funcsigs[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] >=dev-python/traits-4.6.0[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] dev-python/simplejson[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 10e4074b8e5d88f7c0f78d98872c0c5e269b19b4 Author: Horea Christian yandex com> AuthorDate: Sat Apr 22 16:08:09 2017 + Commit: Justin Lecher gentoo org> CommitDate: Sat Apr 22 16:08:09 2017 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=10e4074b sci-libs/nipype: updted dependencies (#776) upstream (as of now) still insists that pytest should be available at runtime and explicitly checks Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-libs/nipype/nipype-.ebuild | 8 ++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index f1affdd81..a58d9d220 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -24,7 +24,10 @@ DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}] - test? ( dev-python/mock[${PYTHON_USEDEP}] ) + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + ) $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) " RDEPEND=" @@ -32,7 +35,8 @@ RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + >=dev-python/traits-4.6.0[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] dev-python/simplejson[${PYTHON_USEDEP}] "
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 054fdad8b4be758ffcc75750c9f2ca91f98574ed Author: Horea Christian yandex com> AuthorDate: Sun Mar 5 20:42:55 2017 + Commit: Marius Brehler linux sungazer de> CommitDate: Sun Mar 5 20:42:55 2017 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=054fdad8 sci-libs/nipype: missing dependency (#742) Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-libs/nipype/nipype-.ebuild | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 650813beb..f1affdd81 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -23,11 +23,12 @@ DEPEND=" dev-python/prov[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] + >=sci-libs/nibabel-2.0.1[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] ) $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) " RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: a195dca39386e7dcba0504b5a18a2b59db3c721b Author: Horea Christian yandex com> AuthorDate: Sun Oct 30 18:33:00 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sun Oct 30 18:33:00 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a195dca3 sci-libs/nipype: fixed sed syntax (#698) Package-Manager: portage-2.3.2 sci-libs/nipype/nipype-.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 8a0480b..af5332c 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -39,8 +39,8 @@ RDEPEND=" python_prepare_all() { distutils-r1_python_prepare_all - EXISTING_REQUIRE="setup_requires=['future', 'configparser']" - CORRECTED_REQUIRE="setup_requires=['future']" + EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]" + CORRECTED_REQUIRE="setup_requires=\['future'\]" sed \ -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ -i setup.py \
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 9fccc5598e579132bff44d6796e5ad2584c7c242 Author: Horea Christian yandex com> AuthorDate: Sun Oct 30 15:30:58 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sun Oct 30 15:30:58 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9fccc559 sci-libs/nipype: setup_requires patch for python3 and configparser (#697) * sci-libs/nipype: setup_requires patch for python3 and configparser Package-Manager: portage-2.3.2 * sci-libs/nipype: fixed indentation Package-Manager: portage-2.3.2 sci-libs/nipype/nipype-0.12.0.ebuild | 2 +- sci-libs/nipype/nipype-0.12.1.ebuild | 2 +- sci-libs/nipype/nipype-.ebuild | 11 +++ 3 files changed, 13 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index c9a783d..09912f6 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -24,7 +24,7 @@ DEPEND=" dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] ) -" + " RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild index c9a783d..09912f6 100644 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -24,7 +24,7 @@ DEPEND=" dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] ) -" + " RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index e9fed21..8a0480b 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -26,6 +26,7 @@ DEPEND=" dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] test? ( dev-python/mock[${PYTHON_USEDEP}] ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) " RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] @@ -36,6 +37,16 @@ RDEPEND=" dev-python/simplejson[${PYTHON_USEDEP}] " +python_prepare_all() { + distutils-r1_python_prepare_all + EXISTING_REQUIRE="setup_requires=['future', 'configparser']" + CORRECTED_REQUIRE="setup_requires=['future']" + sed \ + -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ + -i setup.py \ + || die "sed setup.py" +} + python_test() { nosetests -v || die }
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 67d29b62ff08752595e59287208212ad4eace2aa Author: Horea Christian yandex com> AuthorDate: Tue Oct 18 12:15:48 2016 + Commit: Justin Lecher gentoo org> CommitDate: Tue Oct 18 12:15:48 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=67d29b62 sci-libs/nipype: added missing dep (#694) Package-Manager: portage-2.3.2 sci-libs/nipype/nipype-0.11.0.ebuild | 1 + sci-libs/nipype/nipype-0.12.0.ebuild | 1 + sci-libs/nipype/nipype-0.12.1.ebuild | 1 + 3 files changed, 3 insertions(+) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 8ead439..1c4bf88 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -19,6 +19,7 @@ KEYWORDS="~amd64" IUSE="" DEPEND=" + dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}]" diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index b2f214e..c9a783d 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -19,6 +19,7 @@ KEYWORDS="~amd64" IUSE="test" DEPEND=" + dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild index b2f214e..c9a783d 100644 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -19,6 +19,7 @@ KEYWORDS="~amd64" IUSE="test" DEPEND=" + dev-python/future[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 7a61a45ee33b3b33ebaab456a1cc9c3fc625ffd2 Author: Horea Christian yandex com> AuthorDate: Fri Sep 23 13:15:21 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Fri Sep 23 13:15:21 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7a61a45e Nipype (#676) * sci-libs/nipype: updated python compatibility Package-Manager: portage-2.3.0 * sci-libs/nipype: added test flag Package-Manager: portage-2.3.0 * sci-libs/nipype: added test dependency Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.11.0.ebuild | 4 +--- sci-libs/nipype/nipype-0.12.0.ebuild | 10 +- sci-libs/nipype/nipype-0.12.1.ebuild | 10 +- sci-libs/nipype/nipype-.ebuild | 10 +- 4 files changed, 16 insertions(+), 18 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index ffc2d4e..8ead439 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -4,9 +4,7 @@ EAPI=6 -# pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index 93eede9..b2f214e 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -4,9 +4,7 @@ EAPI=6 -# pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -18,12 +16,14 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" KEYWORDS="~amd64" -IUSE="" +IUSE="test" DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}]" + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( dev-python/mock[${PYTHON_USEDEP}] ) +" RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild index 93eede9..b2f214e 100644 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -4,9 +4,7 @@ EAPI=6 -# pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 @@ -18,12 +16,14 @@ SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" KEYWORDS="~amd64" -IUSE="" +IUSE="test" DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}]" + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( dev-python/mock[${PYTHON_USEDEP}] ) +" RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}] diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 126e8f4..e9fed21 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -4,9 +4,7 @@ EAPI=6 -# pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 git-r3 @@ -19,14 +17,16 @@ EGIT_REPO_URI="https://github.com/nipy/nipype; LICENSE="BSD" SLOT="0" KEYWORDS="" -IUSE="" +IUSE="test" DEPEND=" dev-python/future[${PYTHON_USEDEP}] dev-python/prov[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}]" + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( dev-python/mock[${PYTHON_USEDEP}] ) + " RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pydotplus[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 457be48d11155ce46b8b4ad55842d30805fcac1a Author: Horea Christian yandex com> AuthorDate: Mon Sep 5 19:01:17 2016 + Commit: Christoph Junghans gentoo org> CommitDate: Mon Sep 5 19:01:17 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=457be48d sci-libs/nipype: added threads REQ_USE (#668) Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.11.0.ebuild | 2 +- sci-libs/nipype/nipype-0.12.0.ebuild | 2 +- sci-libs/nipype/nipype-0.12.1.ebuild | 2 +- sci-libs/nipype/nipype-.ebuild | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index ed497f0..ffc2d4e 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -7,7 +7,7 @@ EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" +PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index 4f94eba..93eede9 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -7,7 +7,7 @@ EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" +PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild index 4f94eba..93eede9 100644 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -7,7 +7,7 @@ EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" +PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 336b511..126e8f4 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -7,7 +7,7 @@ EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" +PYTHON_REQ_USE="threads(+),sqlite" inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 0fd3d84da5c7b888c1ef62596cb9cee60e17279e Author: Horea Christian yandex com> AuthorDate: Tue Aug 30 16:08:53 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Tue Aug 30 16:08:53 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0fd3d84d sci-libs/nipype: added dep (#665) Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.12.0.ebuild | 4 +++- sci-libs/nipype/nipype-0.12.1.ebuild | 4 +++- sci-libs/nipype/nipype-.ebuild | 4 +++- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index ed497f0..4f94eba 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -29,7 +29,9 @@ RDEPEND=" dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}]" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + " python_test() { nosetests -v || die diff --git a/sci-libs/nipype/nipype-0.12.1.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild index ed497f0..4f94eba 100644 --- a/sci-libs/nipype/nipype-0.12.1.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -29,7 +29,9 @@ RDEPEND=" dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}]" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + " python_test() { nosetests -v || die diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 7c8c8ed..336b511 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -32,7 +32,9 @@ RDEPEND=" dev-python/pydotplus[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}]" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + " python_test() { nosetests -v || die
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 6af335f648ecc5db0d49385d2bc3213abf8a9e23 Author: Horea Christian yandex com> AuthorDate: Mon Aug 8 11:28:26 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Mon Aug 8 11:28:26 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6af335f6 Nipype - version bump and EAPI upgrade (#656) * sci-libs/nipype: version bump Package-Manager: portage-2.3.0 * sci-libs/nipype: updted EAPI version Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.11.0.ebuild | 2 +- sci-libs/nipype/nipype-0.12.0.ebuild | 2 +- sci-libs/nipype/{nipype-0.11.0.ebuild => nipype-0.12.1.ebuild} | 2 +- sci-libs/nipype/nipype-.ebuild | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 7afa841..ed497f0 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) diff --git a/sci-libs/nipype/nipype-0.12.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild index 7afa841..ed497f0 100644 --- a/sci-libs/nipype/nipype-0.12.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.12.1.ebuild similarity index 99% copy from sci-libs/nipype/nipype-0.11.0.ebuild copy to sci-libs/nipype/nipype-0.12.1.ebuild index 7afa841..ed497f0 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.1.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 21eff08..7c8c8ed 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} )
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 985547a76c2c2072b0e29ea4651729174794c91f Author: Horea Christian yandex com> AuthorDate: Tue Jul 19 14:24:15 2016 + Commit: Christoph Junghans gentoo org> CommitDate: Tue Jul 19 14:24:15 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=985547a7 sci-libs/nipype: corrected PV reference and bumped to newest version Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.11.0.ebuild | 2 +- sci-libs/nipype/{nipype-0.11.0.ebuild => nipype-0.12.0.ebuild} | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index ea3f1c1..7afa841 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -13,7 +13,7 @@ inherit distutils-r1 DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.12.0.ebuild similarity index 91% copy from sci-libs/nipype/nipype-0.11.0.ebuild copy to sci-libs/nipype/nipype-0.12.0.ebuild index ea3f1c1..7afa841 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.12.0.ebuild @@ -13,7 +13,7 @@ inherit distutils-r1 DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 57e1361bcc6941bf647da439bd8f69deeffd058a Author: Horea Christian yandex com> AuthorDate: Tue Jul 19 14:21:48 2016 + Commit: Christoph Junghans gentoo org> CommitDate: Tue Jul 19 14:21:48 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=57e1361b sci-libs/nipype: taking version number from ebuild filename Package-Manager: portage-2.3.0 sci-libs/nipype/nipype-0.11.0.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 0b9dc1f..ea3f1c1 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -13,7 +13,7 @@ inherit distutils-r1 DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" HOMEPAGE="http://nipy.sourceforge.net/nipype/; -SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/nipy/nipype/archive/{PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 2248e6e5482aefdb38180bb6e2cff4545ac351ec Author: Horea Christian yandex com> AuthorDate: Tue Apr 26 16:47:09 2016 + Commit: Justin Lecher gentoo org> CommitDate: Tue Apr 26 16:47:09 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2248e6e5 sci-libs/nipype: added python 3_4 compatibility Package-Manager: portage-2.2.28 sci-libs/nipype/nipype-0.11.0.ebuild | 2 +- sci-libs/nipype/nipype-.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 74066fb..0b9dc1f 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -5,7 +5,7 @@ EAPI=5 # pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} ) +# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) PYTHON_REQ_USE="sqlite" diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index ce971d1..21eff08 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -5,7 +5,7 @@ EAPI=5 # pyamg missing py3 support -# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} ) +# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3,3_4} ) PYTHON_COMPAT=( python2_7 ) PYTHON_REQ_USE="sqlite"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 505ba53d90615e85acfcc64f33fee33f5b8473d5 Author: Horea Christian yandex com> AuthorDate: Sun Feb 21 04:29:59 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sun Feb 21 04:29:59 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=505ba53d sci-libs/nipype: dded deps Package-Manager: portage-2.2.27 sci-libs/nipype/nipype-.ebuild | 10 ++ 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 380ae54..ce971d1 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -23,14 +23,16 @@ IUSE="" DEPEND=" dev-python/future[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}]" RDEPEND=" - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}]" + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" python_test() { nosetests -v || die
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 096d8640fc5f5de1371a3e4470ced74b6e1cdde8 Author: Horea Christian yandex com> AuthorDate: Sun Feb 21 04:32:01 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sun Feb 21 04:32:01 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=096d8640 sci-libs/nipype: added and sorted deps Package-Manager: portage-2.2.27 sci-libs/nipype/nipype-0.11.0.ebuild | 9 + 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 879f960..74066fb 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -21,14 +21,15 @@ KEYWORDS="~amd64" IUSE="" DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}]" RDEPEND=" - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}]" + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" python_test() { nosetests -v || die
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 8f289729909a3196582cc725acb6e75f3d5e1c0a Author: Horea Christian mail ru> AuthorDate: Wed Nov 11 21:58:39 2015 + Commit: Marius Brehler linux sungazer de> CommitDate: Wed Nov 11 21:58:39 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8f289729 sci-libs/nipype: added dep on future Package-Manager: portage-2.2.23 sci-libs/nipype/ChangeLog | 3 +++ sci-libs/nipype/nipype-.ebuild | 1 + 2 files changed, 4 insertions(+) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index d90d1d9..1214c8e 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ + 11 Nov 2015; Horea Christiannipype-.ebuild: + sci-libs/nipype: added dep on future + 10 Nov 2015; Horea Christian nipype-0.11.0.ebuild: sci-libs/nipype: added keyword diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 4ece8a8..380ae54 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -22,6 +22,7 @@ KEYWORDS="" IUSE="" DEPEND=" + dev-python/future[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}]"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: e3c66a03567514092b9e5adec59ce9335adc1416 Author: Horea Christian mail ru> AuthorDate: Tue Nov 10 00:46:45 2015 + Commit: Justin Lecher gentoo org> CommitDate: Tue Nov 10 00:46:45 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3c66a03 sci-libs/nipype: new versioned version Package-Manager: portage-2.2.23 sci-libs/nipype/ChangeLog| 5 + sci-libs/nipype/nipype-0.11.0.ebuild | 35 +++ 2 files changed, 40 insertions(+) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index 1cc3228..755a95f 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ +*nipype-0.11.0 (10 Nov 2015) + + 10 Nov 2015; Horea Christian+nipype-0.11.0.ebuild: + sci-libs/nipype: new versioned version + 27 Jul 2015; nipype-.ebuild: setting USE requirement before inherit diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild new file mode 100644 index 000..7751c6c --- /dev/null +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +# pyamg missing py3 support +# PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} ) +PYTHON_COMPAT=( python2_7 ) +PYTHON_REQ_USE="sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/; +SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}]" +RDEPEND=" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}]" + +python_test() { + nosetests -v || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: a478cc96c142a3c66ef501b9a2b14f95177504bd Author: Horea Christian mail ru> AuthorDate: Tue Nov 10 00:50:32 2015 + Commit: Justin Lecher gentoo org> CommitDate: Tue Nov 10 00:50:32 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a478cc96 sci-libs/nipype: added keyword Package-Manager: portage-2.2.23 sci-libs/nipype/ChangeLog| 3 +++ sci-libs/nipype/nipype-0.11.0.ebuild | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index 755a95f..d90d1d9 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ + 10 Nov 2015; Horea Christiannipype-0.11.0.ebuild: + sci-libs/nipype: added keyword + *nipype-0.11.0 (10 Nov 2015) 10 Nov 2015; Horea Christian +nipype-0.11.0.ebuild: diff --git a/sci-libs/nipype/nipype-0.11.0.ebuild b/sci-libs/nipype/nipype-0.11.0.ebuild index 7751c6c..879f960 100644 --- a/sci-libs/nipype/nipype-0.11.0.ebuild +++ b/sci-libs/nipype/nipype-0.11.0.ebuild @@ -17,7 +17,7 @@ SRC_URI="https://github.com/nipy/nipype/archive/0.11.0.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="" DEPEND="
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 34bef74fe52c98dcd5f8677972b4bbd9b6de532a Author: Justin Lecher gentoo org> AuthorDate: Mon Sep 21 16:04:51 2015 + Commit: Justin Lecher gentoo org> CommitDate: Mon Sep 21 16:04:51 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=34bef74f sci-libs/nipype: Drop empty lines Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher gentoo.org> sci-libs/nipype/nipype-.ebuild | 1 - 1 file changed, 1 deletion(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 414e447..4ece8a8 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -31,7 +31,6 @@ RDEPEND=" dev-python/networkx[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}]" - python_test() { nosetests -v || die }
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 6825043656a0f6c29e38013cfcad65ca7d907751 Author: Horea Christian h.chr AT mail DOT ru AuthorDate: Sun Jul 26 22:00:07 2015 + Commit: Justin Lecher jlec AT gentoo DOT org CommitDate: Sun Jul 26 22:00:07 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=68250436 fixed USE flag requirement Package-Manager: portage-2.2.20 sci-libs/nipype/ChangeLog | 3 +++ sci-libs/nipype/nipype-.ebuild | 4 +++- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index 0b564ed..eaefd2b 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 26 Jul 2015; chym...@gentoo.org nipype-.ebuild: + fixed USE flag requirement + 06 Jul 2015; Horea Christian h@mail.ru nipype-.ebuild: need sqlite3 module diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index a9eea5a..b886896 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -25,12 +25,14 @@ DEPEND= dev-python/numpy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] RDEPEND= - dev-lang/python[sqlite] sci-libs/scipy[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] +PYTHON_REQ_USE=sqlite + + python_test() { nosetests -v || die }
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 9462158de8e19f8d43b5f870d10cfde1f1415dc5 Author: Horea Christian h.chr AT mail DOT ru AuthorDate: Mon Jul 27 22:03:52 2015 + Commit: Justin Lecher jlec AT gentoo DOT org CommitDate: Mon Jul 27 22:03:52 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9462158d setting USE requirement before inherit Package-Manager: portage-2.2.20 sci-libs/nipype/ChangeLog | 3 +++ sci-libs/nipype/nipype-.ebuild | 3 +-- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index eaefd2b..154db22 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 27 Jul 2015; chym...@gentoo.org nipype-.ebuild: + setting USE requirement before inherit + 26 Jul 2015; chym...@gentoo.org nipype-.ebuild: fixed USE flag requirement diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index b886896..47b261c 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -7,6 +7,7 @@ EAPI=5 # pyamg missing py3 support # PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} ) PYTHON_COMPAT=( python2_7 ) +PYTHON_REQ_USE=sqlite inherit distutils-r1 git-r3 @@ -30,8 +31,6 @@ RDEPEND= dev-python/networkx[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] -PYTHON_REQ_USE=sqlite - python_test() { nosetests -v || die
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 37dc69b5f66bf2e8bb1594368f263f49bc2704ff Author: Horea Christian h.chr AT mail DOT ru AuthorDate: Mon Jul 6 09:52:40 2015 + Commit: Nicolas Bock nicolasbock AT gentoo DOT org CommitDate: Mon Jul 6 09:52:40 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=37dc69b5 need sqlite3 module Package-Manager: portage-2.2.20 sci-libs/nipype/ChangeLog | 3 +++ sci-libs/nipype/nipype-.ebuild | 1 + 2 files changed, 4 insertions(+) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index 09e1407..0b564ed 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 06 Jul 2015; Horea Christian h@mail.ru nipype-.ebuild: + need sqlite3 module + 06 Jun 2015; Horea Christian h@mail.ru nipype-.ebuild: no longer depending on outdated version diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 018340f..a9eea5a 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -25,6 +25,7 @@ DEPEND= dev-python/numpy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] RDEPEND= + dev-lang/python[sqlite] sci-libs/scipy[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: e04095ce38eee7d280d766c76e90fb707443de83 Author: Horea Christian h.chr AT mail DOT ru AuthorDate: Sat Jun 6 07:54:34 2015 + Commit: Justin Lecher jlec AT gentoo DOT org CommitDate: Sat Jun 6 07:54:34 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e04095ce no longer depending on outdated version Package-Manager: portage-2.2.20 sci-libs/nipype/ChangeLog | 6 -- sci-libs/nipype/nipype-.ebuild | 4 ++-- 2 files changed, 6 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog index e4f160f..09e1407 100644 --- a/sci-libs/nipype/ChangeLog +++ b/sci-libs/nipype/ChangeLog @@ -1,8 +1,10 @@ # ChangeLog for sci-libs/nipype -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 06 Jun 2015; Horea Christian h@mail.ru nipype-.ebuild: + no longer depending on outdated version + 06 Jan 2014; Justin Lecher j...@gentoo.org nipype-.ebuild, metadata.xml: Switch from git-2 to git-r3 - diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index 0b833f8..018340f 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -23,7 +23,7 @@ IUSE= DEPEND= dev-python/setuptools[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] - =sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] RDEPEND= sci-libs/scipy[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/
commit: 0d4239a875340d8cb932de83e21b97d8e5feb57a Author: Horea Christian h.chr AT mail DOT ru AuthorDate: Wed Jun 11 12:00:28 2014 + Commit: Jauhien Piatlicki jauhien AT gentoo DOT org CommitDate: Wed Jun 11 12:00:28 2014 + URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d4239a8 Added vital dep --- sci-libs/nipype/nipype-.ebuild | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/sci-libs/nipype/nipype-.ebuild b/sci-libs/nipype/nipype-.ebuild index a9ca437..75495c8 100644 --- a/sci-libs/nipype/nipype-.ebuild +++ b/sci-libs/nipype/nipype-.ebuild @@ -27,7 +27,8 @@ DEPEND= RDEPEND= sci-libs/scipy[${PYTHON_USEDEP}] dev-python/traits[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] python_test() { nosetests -v || die