commit: 0a8ba900d4d39a8f4d762fd9c04e470e3272b1d4
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 27 21:40:10 2020 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Tue Oct 27 21:40:10 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0a8ba900
sci-biology/profphd: Port to EAPI 7
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
.../profphd/files/profphd-1.0.40-symlink.patch | 11 ++++++++
sci-biology/profphd/profphd-1.0.40.ebuild | 30 ++++++++++------------
2 files changed, 24 insertions(+), 17 deletions(-)
diff --git a/sci-biology/profphd/files/profphd-1.0.40-symlink.patch
b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch
new file mode 100644
index 00000000000..7733d55af4a
--- /dev/null
+++ b/sci-biology/profphd/files/profphd-1.0.40-symlink.patch
@@ -0,0 +1,11 @@
+--- a/src/prof/Makefile
++++ b/src/prof/Makefile
+@@ -40,7 +40,7 @@
+ ./. $(DESTDIR)$(prefix)/share/profphd/prof/.
+ find $(DESTDIR)$(prefix)/share/profphd/prof/embl/phd.pl
$(DESTDIR)$(prefix)/share/profphd/prof/scr/CONFprof.pl
$(DESTDIR)$(prefix)/share/profphd/prof/prof
$(DESTDIR)$(prefix)/share/profphd/prof/scr/lib/prof.pm \
+ -type f -exec sed -i -e
's|__PREFIX__|$(prefix)|g;s|__VERSION__|$(VERSION)|;' {} \;
+- rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin
&& ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/prof
++ rm -rf $(DESTDIR)$(prefix)/bin/prof && mkdir -p $(DESTDIR)$(prefix)/bin
&& ln -s ../share/profphd/prof/prof $(DESTDIR)$(prefix)/bin/profphd
+
+ install-neuralnet:
+ mkdir -p $(DESTDIR)$(prefix)/share/profphd/prof/embl/para && rsync -aC \
diff --git a/sci-biology/profphd/profphd-1.0.40.ebuild
b/sci-biology/profphd/profphd-1.0.40.ebuild
index 8e24cebeb5f..4f9a16a9fe9 100644
--- a/sci-biology/profphd/profphd-1.0.40.ebuild
+++ b/sci-biology/profphd/profphd-1.0.40.ebuild
@@ -1,37 +1,33 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
-
-inherit eutils
+EAPI=7
DESCRIPTION="Secondary structure and solvent accessibility predictor"
HOMEPAGE="https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction";
SRC_URI="ftp://rostlab.org/profphd/${P}.tar.xz";
-SLOT="0"
LICENSE="GPL-2"
+SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
DEPEND="dev-lang/perl"
-RDEPEND="${DEPEND}
+RDEPEND="
+ ${DEPEND}
dev-perl/librg-utils-perl
sci-libs/profnet
- sci-libs/profphd-utils
-"
+ sci-libs/profphd-utils"
-src_prepare() {
- sed \
- -e '/ln -s/s:prof$:profphd:g' \
- -i src/prof/Makefile || die
- epatch "${FILESDIR}"/${PN}-1.0.39-perl.patch
-}
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.0.39-perl.patch
+ "${FILESDIR}"/${PN}-1.0.40-symlink.patch
+)
src_compile() {
- emake prefix="${EPREFIX}/usr"
+ emake prefix="${EPREFIX}"/usr
}
src_install() {
- emake prefix="${EPREFIX}/usr" DESTDIR="${D}" install
+ emake prefix="${EPREFIX}"/usr DESTDIR="${D}" install
+ einstalldocs
}
