subject:"\[gentoo\-commits\] repo\/proj\/guru\:dev commit in\: sci\-physics\/SU2\/"

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/

2023-04-23 Thread Sergey Torokhov

commit: 430636942a1ff185190c039945938739915deda5
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sun Apr 23 13:00:42 2023 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sun Apr 23 13:00:42 2023 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=43063694

sci-physics/SU2: 7.5.1, add missed unbundle system libs patch

Signed-off-by: Sergey Torokhov  yandex.ru>

 .../SU2/files/SU2-7.5.1-system-libraries.patch | 144 +
 1 file changed, 144 insertions(+)

diff --git a/sci-physics/SU2/files/SU2-7.5.1-system-libraries.patch 
b/sci-physics/SU2/files/SU2-7.5.1-system-libraries.patch
new file mode 100644
index 0..06d68657d
--- /dev/null
+++ b/sci-physics/SU2/files/SU2-7.5.1-system-libraries.patch
@@ -0,0 +1,144 @@
+diff -Nuar a/SU2_CFD/include/SU2_CFD.hpp b/SU2_CFD/include/SU2_CFD.hpp
+--- a/SU2_CFD/include/SU2_CFD.hpp  2023-02-06 19:03:44.0 +0300
 b/SU2_CFD/include/SU2_CFD.hpp  2023-03-18 17:24:35.0 +0300
+@@ -29,7 +29,7 @@
+ 
+ #include "../../Common/include/parallelization/mpi_structure.hpp"
+ #include "../../Common/include/parallelization/omp_structure.hpp"
+-#include "CLI11.hpp"
++#include "CLI.hpp"
+ 
+ #include "drivers/CDriver.hpp"
+ #include "drivers/CSinglezoneDriver.hpp"
+diff -Nuar a/meson.build b/meson.build
+--- a/meson.build  2023-02-06 19:03:44.0 +0300
 b/meson.build  2023-04-22 18:51:55.0 +0300
+@@ -6,15 +6,11 @@
+   'c_std=c99',
+   'cpp_std=c++11'])
+ 
+-if meson.version() != '0.61.1'
+-  error('SU2 must be configured with the extended Meson script (./meson.py) 
in the SU2 root directory.')
+-endif
+-
+ pymod = import('python')
+ python = pymod.find_installation()
+ 
+ su2_cpp_args = []
+-su2_deps = [declare_dependency(include_directories: 'externals/CLI11')]
++su2_deps = [declare_dependency(include_directories: '/usr/include/CLI')]
+ 
+ default_warning_flags = []
+ if build_machine.system() != 'windows'
+@@ -70,7 +66,7 @@
+ endif
+ 
+ if get_option('enable-autodiff') or get_option('enable-directdiff')
+-  codi_dep = [declare_dependency(include_directories: 
'externals/codi/include')]
++  codi_dep = [declare_dependency(include_directories: '/usr/include/codi')]
+   codi_rev_args = ['-DCODI_REVERSE_TYPE']
+   codi_for_args = ['-DCODI_FORWARD_TYPE']
+ endif
+@@ -87,7 +83,8 @@
+ 
+ # add cgns library
+ if get_option('enable-cgns')
+-  subdir('externals/cgns')
++  cpp = meson.get_compiler('cpp')
++  cgns_dep = cpp.find_library('cgns')
+   su2_deps += cgns_dep
+   su2_cpp_args += '-DHAVE_CGNS'
+ endif
+@@ -125,7 +122,7 @@
+ 
+   # add medi dependency
+   if get_option('enable-autodiff') or get_option('enable-directdiff')
+-codi_dep += declare_dependency(include_directories: 
['externals/medi/include', 'externals/medi/src'])
++codi_dep += declare_dependency(include_directories: 
['/usr/share/MeDiPack/include', '/usr/share/MeDiPack/src'])
+   endif
+ endif
+ 
+@@ -135,7 +132,7 @@
+ 
+   # add opdi dependency
+   if get_option('enable-autodiff')
+-codi_dep += declare_dependency(include_directories: 
'externals/opdi/include')
++codi_dep += declare_dependency(include_directories: '/usr/include/opdi')
+ 
+ if get_option('opdi-backend') == 'macro'
+   su2_cpp_args += '-DFORCE_OPDI_MACRO_BACKEND'
+@@ -203,20 +200,16 @@
+ 
+ if get_option('enable-librom')
+
+-   assert(get_option('librom_root')!='',
+-   'Must specify librom folder (-Dlibrom_root=path/to/libROM)')
+-   
+su2_cpp_args += '-DHAVE_LIBROM'
+ 
+-   librom_root = get_option('librom_root')
+-   librom_dep = declare_dependency(include_directories: librom_root+'/lib',
+-   link_args: ['-L'+librom_root+'/build', 
'-lROM'])
++   librom_dep = declare_dependency(include_directories: '/usr/include/libROM',
++   link_args: ['-lROM'])
+ 
+su2_deps += librom_dep
+ 
+ endif
+ 
+-mel_dep = declare_dependency(include_directories: 'externals/mel')
++mel_dep = declare_dependency(include_directories: '/usr/include/MEL')
+ su2_deps += mel_dep
+ 
+ extra_deps = get_option('extra-deps').split(',')
+@@ -226,12 +219,12 @@
+   endif
+ endforeach
+ 
+-catch2_dep = declare_dependency(include_directories: 'externals/catch2/')
++if get_option('enable-tests')
++  catch2_dep = declare_dependency(include_directories: '/usr/include/catch2/')
++endif
+ 
+ if get_option('enable-mpp')
+-  cmake = import('cmake')
+-  mpp_subproj = cmake.subproject('Mutationpp')
+-  mpp_dep = mpp_subproj.dependency('mutation++')
++  mpp_dep = dependency('mutation++')
+   su2_deps += mpp_dep
+   su2_cpp_args += '-DHAVE_MPP'
+ endif
+@@ -258,7 +251,7 @@
+ 
+ if omp and get_option('enable-autodiff')
+   py = find_program('python3','python')
+-  p = run_command(py, 'externals/opdi/syntax/check.py', 'su2omp.syntax.json', 
'Common', 'SU2_CFD', '-p', '*.hpp', '*.cpp', '*.inl', '-r', '-q')
++  p = run_command(py,

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2023-04-23 Thread Sergey Torokhov

commit: 987255bb055277a4b0cbadab98ba2905d77a202d
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sun Apr 23 10:29:22 2023 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sun Apr 23 10:29:22 2023 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=987255bb

sci-physics/SU2: maintainer-needed

Unfortunately I have no time to maintain this package
in acceptable quality and provide needed updates on time.

Before droping of maintaining I tried to bump version to 7.5.1
and fix python 3.11 compatibility.

If anyone interesting to grub this package please note:

1. The test phase currently depends on one-header dev-cpp/catch lib,
 i.e. https://su2code.github.io/docs/Test-Cases/ states:
 "Note: While many of the cases are used for regression testing,
 the test case suite is provided without any guarantees on performance
 or expected results. Tutorials (which are more thoroughly checked
 for convergence and results) can be found here."

 Therefore bundled parmetis/metis are used otherwise it
 results in numerous Tutorials tests failures.
 Thus it better to pass Tutorials tests than brake the package at all.

 P.S.
 Great thanks to Alessandro Barbieri  gmail.com>
 for work on unbundle of thirdparty libraries.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/metadata.xml | 5 +
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/sci-physics/SU2/metadata.xml b/sci-physics/SU2/metadata.xml
index 361d8a68f..41dce6ab0 100644
--- a/sci-physics/SU2/metadata.xml
+++ b/sci-physics/SU2/metadata.xml
@@ -1,10 +1,7 @@
 
 https://www.gentoo.org/dtd/metadata.dtd;>
 
-  
-torokhov-...@yandex.ru
-Sergey Torokhov
-  
+  
   
 Enable support for reverse automatic 
differentiation
 Build with CGNS support

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2022-12-09 Thread Sergey Torokhov

commit: 01d691c3d7f455d6c3a2e52856446c599c754cf7
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Fri Dec  9 16:50:53 2022 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Fri Dec  9 16:50:53 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=01d691c3

sci-physics/SU2: update src_test and src_install

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.2.0-r100.ebuild | 17 -
 sci-physics/SU2/SU2-7.2.0-r2.ebuild   | 12 ++--
 2 files changed, 18 insertions(+), 11 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0-r100.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r100.ebuild
index 97dceb66e..482a29200 100644
--- a/sci-physics/SU2/SU2-7.2.0-r100.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r100.ebuild
@@ -165,6 +165,7 @@ src_test() {
if use autodiff ; then
ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD_AD SU2_PY/SU2_CFD_AD 
|| die
ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT_AD SU2_PY/SU2_DOT_AD 
|| die
+   ln -s ../../${P}-build/SU2_PY/pySU2/pysu2ad.py 
SU2_PY/pysu2ad.py || die
ln -s ../../${P}-build/SU2_PY/pySU2/_pysu2ad.so 
SU2_PY/_pysu2ad.so || die
if use directdiff ; then
ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD_DIRECTDIFF 
SU2_PY/SU2_CFD_DIRECTDIFF || die
@@ -187,15 +188,13 @@ src_test() {
fi
if use autodiff ; then
${EPYTHON} parallel_regression_AD.py || die
-   else
-   ${EPYTHON} parallel_regression.py || die
fi
+   ${EPYTHON} parallel_regression.py || die
else
if use autodiff ; then
${EPYTHON} serial_regression_AD.py || die
-   else
-   ${EPYTHON} serial_regression.py || die
fi
+   ${EPYTHON} serial_regression.py || die
fi
popd || die
 }
@@ -205,7 +204,7 @@ src_install() {
 
mkdir -p "${D}$(python_get_sitedir)/SU2_PY" || die
if use python; then
-   mv "${ED}"/usr/bin/{pysu2.py,_pysu2.so} -t 
"${D}$(python_get_sitedir)/SU2_PY" || die
+   mv "${ED}"/usr/bin/*.so -t "${D}$(python_get_sitedir)/SU2_PY" 
|| die
fi
mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran} -t 
"${D}$(python_get_sitedir)" || die
mv "${ED}"/usr/bin/*.py -t "${D}$(python_get_sitedir)/SU2_PY" || die
@@ -217,9 +216,9 @@ src_install() {
fi
 
local SU2_RUN="$(python_get_sitedir)/SU2_PY"
-   echo SU2_RUN="${SU2_RUN}" > 99_SU2
-   echo PATH="${SU2_RUN}" >> 99_SU2
-   echo PYTHONPATH="${SU2_RUN}" >> 99_SU2
+   echo SU2_RUN="${SU2_RUN}" > 99SU2
+   echo PATH="${SU2_RUN}" >> 99SU2
+   echo PYTHONPATH="${SU2_RUN}" >> 99SU2
 
-   doenvd 99_SU2
+   doenvd 99SU2
 }

diff --git a/sci-physics/SU2/SU2-7.2.0-r2.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r2.ebuild
index 1bc85bf7e..adc8adfd5 100644
--- a/sci-physics/SU2/SU2-7.2.0-r2.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r2.ebuild
@@ -156,12 +156,20 @@ src_test() {
 src_install() {
DESTDIR="${D}" meson_src_install
 
-   mkdir -p "${D}$(python_get_sitedir)" || die
-   mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran,*.py} -t 
"${D}$(python_get_sitedir)" || die
+   mkdir -p "${D}$(python_get_sitedir)/SU2_PY" || die
+   mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran} -t 
"${D}$(python_get_sitedir)" || die
+   mv "${ED}"/usr/bin/*.py -t "${D}$(python_get_sitedir)/SU2_PY" || die
python_optimize "${D}/$(python_get_sitedir)"
 
if use tutorials ; then
insinto "/usr/share/${PN}"
doins -r Tutorials
fi
+
+   local SU2_RUN="$(python_get_sitedir)/SU2_PY"
+   echo SU2_RUN="${SU2_RUN}" > 99SU2
+   echo PATH="${SU2_RUN}" >> 99SU2
+   echo PYTHONPATH="${SU2_RUN}" >> 99SU2
+
+   doenvd 99SU2
 }

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2022-12-09 Thread Sergey Torokhov

commit: 6e77cc7037fb293ce3fa48f8153b4764f84c45ce
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Fri Dec  9 16:48:04 2022 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Fri Dec  9 16:48:37 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=6e77cc70

sci-physics/SU2: cleanup Manifest

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 3b721ab82..128d0d5aa 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,4 +1,3 @@
 DIST SU2-7.2.0-TestCases.tar.gz 464156192 BLAKE2B 
405a5ccdd13bc5109feca1462b6ac434a4d817adbaca964465678683d5593fa940579e364e33414da5f059a89b2919fbc0baed82967246356da49c87ac9ce63f
 SHA512 
d75894c285ac7cb4c72eece10a02f014fb2d85b585c08d1a9bbf12ab51f6004be99c368bde98734891dc45446d0656b21317b50d7d14af95b6ce4bfe72871f11
 DIST SU2-7.2.0-Tutorials.tar.gz 72845754 BLAKE2B 
ef670a77d0189e9fd8ad48d96bd4617de558311d0df0d81a10dd3cbf8b97b7fbcb0e6725746d8451ce12a923f6895a392582fa980f4054b3b1306609431900ff
 SHA512 
c91cfbdfb26169fc36575f60ec3133ea4a6f39c8433e276840a0f96c7508f3ee898020179ac01d606da9c5e10ee2ad263a642ff6f6b7400d75f4eb03ee7e1cf8
 DIST SU2-7.2.0.tar.gz 15356101 BLAKE2B 
e52f09d0451c200f6fd6874d55bedf7733f934cb2cee378ca286107960bd82332adc932cae57e9052654b34972717a4f8969db216acdcef8a6816b648119df94
 SHA512 
5600ebb97ef5939333907f75cda58a02810642439309fc8626ed974dfbfaffdf0cd7d9cc81de310cb12e6f92f98b64c58d607ad93095bd86cc583768947ccf6b
-DIST mutationpp-1.0.1.tar.gz 4021945 BLAKE2B 
caae3ca155541a36822a950047efb867aab098bc9db311d675acca272d7f317ff35524086a0ea5eda524bbe125e4874f41dc1dbad92bfee4387e3a0c649bbd0a
 SHA512 
ba8beeb7cdaf1b526571e27f745d8d53c1e20a96bd194a5949acb8b6d5f75553867158a63bfc7198502177a9e8a91bf82a67d450a3ba72b21f8490539f45ef01

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2022-12-08 Thread Sergey Torokhov

commit: 7af8494682fb2d4f6bf0f1d0e2791dd305901a3c
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Thu Dec  8 22:15:02 2022 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Thu Dec  8 22:15:02 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=7af84946

sci-physics/SU2: 7.2.0-r2 bump; unbundle some deps and fix build

Thanks to Alessandro Barbieri  gmail.com>
for unbundling patch.

Signed-off-by: Sergey Torokhov  yandex.ru>

 .../SU2/{SU2-7.2.0.ebuild => SU2-7.2.0-r2.ebuild}  | 37 ++
 1 file changed, 24 insertions(+), 13 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r2.ebuild
similarity index 83%
rename from sci-physics/SU2/SU2-7.2.0.ebuild
rename to sci-physics/SU2/SU2-7.2.0-r2.ebuild
index 8c0012dae..1bc85bf7e 100644
--- a/sci-physics/SU2/SU2-7.2.0.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r2.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
 inherit meson python-single-r1
 
@@ -11,7 +11,6 @@ DESCRIPTION="SU2: An Open-Source Suite for Multiphysics 
Simulation and Design"
 HOMEPAGE="https://su2code.github.io/;
 SRC_URI="
https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
-   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
 "
@@ -22,7 +21,7 @@ LICENSE="Apache-2.0 LGPL-2.1 LGPL-3 ZLIB all-rights-reserved 
free-noncomm"
 SLOT="0"
 KEYWORDS="~amd64"
 
-# cgns, metis, parmetis are bundled;
+# metis, parmetis are bundled;
 # omp is disable as it's experimental;
 # pastix is disabled as it's require additional external bundled libs;
 # autodiff (medi), directdiff (opti) features require additional external 
bundled libs.
@@ -37,33 +36,38 @@ RESTRICT="!test? ( test )"
 REQUIRED_USE="
${PYTHON_REQUIRED_USE}
mkl? ( !openblas )
+   parmetis? ( mpi )
+   test? ( parmetis tutorials )
 "
 
 RDEPEND="
${PYTHON_DEPS}
-   mpi? ( || ( >=sys-cluster/openmpi-1.10.7[cxx] 
>=sys-cluster/mpich-3.3[cxx] ) )
+   cgns? ( >=sci-libs/cgnslib-4 )
mkl? ( sci-libs/mkl )
+   mpi? ( virtual/mpi[cxx] )
+   mpp? ( sci-libs/Mutationpp:= )
openblas? ( sci-libs/openblas )
 "
 DEPEND="
${RDEPEND}
+   dev-cpp/cli11:=
tecio? ( >=dev-libs/boost-1.76.0:= )
+   test? ( =boost-1.75
sed -i -e 's:cpp_std=c++11:cpp_std=c++14:' meson.build || die
 
@@ -85,6 +92,9 @@ src_prepare(){
 
# Disable python-wrapper tests
sed -i "/append(pywrapper_/s/./#&/" TestCases/parallel_regression.py || 
die
+   # Disable failed tests
+   sed -i "/append(dyn_fsi/s/./#&/" TestCases/parallel_regression.py || die
+   sed -i "/append(fd_sp_pinArray_cht_2d_dp_hf/s/./#&/" 
TestCases/parallel_regression.py || die
 
# Copy absence mesh file
if use test ; then
@@ -125,8 +135,8 @@ src_test() {
 
export SU2_RUN="${S}/SU2_PY"
export SU2_HOME="${S}"
-   export PATH=$PATH:$SU2_RUN
-   export PYTHONPATH=$PYTHONPATH:$SU2_RUN
+   export PATH="${PATH}:${SU2_RUN}"
+   export PYTHONPATH="${PYTHONPATH}:${SU2_RUN}"
 
einfo "Running UnitTests ..."
../${P}-build/UnitTests/test_driver || die
@@ -144,13 +154,14 @@ src_test() {
 }
 
 src_install() {
-   meson_src_install
+   DESTDIR="${D}" meson_src_install
+
mkdir -p "${D}$(python_get_sitedir)" || die
mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran,*.py} -t 
"${D}$(python_get_sitedir)" || die
python_optimize "${D}/$(python_get_sitedir)"
 
if use tutorials ; then
-   insinto "/usr/share/${P}"
+   insinto "/usr/share/${PN}"
doins -r Tutorials
fi
 }

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2022-12-08 Thread Sergey Torokhov

commit: 46785f14e0680f12b6d03b8c738b1e9fc1ea30b8
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Thu Dec  8 22:02:31 2022 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Thu Dec  8 22:02:31 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=46785f14

sci-physics/SU2: revert unbundling metis/parmetis (as fail tests)

The unbundling of metis/[armetis results in numerous failures
of tests, especially the Tutorial tests that are preferred
to be checked.

The revision with additional USE-flags is now '-r1xx'.

The changes also enable python tests;
add restriction ' yandex.ru>

 .../{SU2-7.2.0-r1.ebuild => SU2-7.2.0-r100.ebuild} | 54 ++
 .../SU2/files/SU2-7.2.0-system-libraries.patch | 30 +++-
 2 files changed, 43 insertions(+), 41 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0-r1.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r100.ebuild
similarity index 78%
rename from sci-physics/SU2/SU2-7.2.0-r1.ebuild
rename to sci-physics/SU2/SU2-7.2.0-r100.ebuild
index 29413cf3e..97dceb66e 100644
--- a/sci-physics/SU2/SU2-7.2.0-r1.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r100.ebuild
@@ -29,20 +29,15 @@ RDEPEND="
cgns? ( >=sci-libs/cgnslib-4 )
librom? ( sci-libs/libROM )
mkl? ( sci-libs/mkl )
-   mpi? (
-   sci-libs/metis
-   virtual/mpi[cxx]
-   )
+   mpi? ( virtual/mpi[cxx] )
mpp? ( sci-libs/Mutationpp:= )
openblas? ( sci-libs/openblas )
-   parmetis? ( sci-libs/parmetis )
pastix? (
sci-libs/MeDiPack-1.2:= )
)
tecio? ( >=dev-libs/boost-1.76.0:= )
-   test? ( dev-cpp/catch:0 )
+   test? ( =boost-1.75
@@ -120,8 +113,14 @@ src_prepare(){
# Force Disable parmetis support in meson.build (configure.ac has 
optional switch)
use !parmetis && { sed -i -e "/parmetis/Id" meson.build || die ; }
 
-   # Disable python-wrapper tests
-   sed -i "/append(pywrapper_/s/./#&/" TestCases/parallel_regression.py || 
die
+   # Disable failed tests
+   sed -i "/append(dyn_fsi/s/./#&/" TestCases/parallel_regression.py || die
+   sed -i "/append(fd_sp_pinArray_cht_2d_dp_hf/s/./#&/" 
TestCases/parallel_regression.py || die
+   if ! use directdiff ; then
+   # Disable TestCase('unsteady_cylinder_windowed_average')
+   sed -i "217s/./#&/" TestCases/parallel_regression_AD.py || die
+   fi
+   sed -i "/append(dyn_discadj_fsi/s/./#&/" 
TestCases/parallel_regression_AD.py || die
 
# Copy absence mesh file
if use test ; then
@@ -161,6 +160,16 @@ src_test() {
ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT || die
ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO || die
ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL || die
+   ln -s ../../${P}-build/SU2_PY/pySU2/pysu2.py SU2_PY/pysu2.py || die
+   ln -s ../../${P}-build/SU2_PY/pySU2/_pysu2.so SU2_PY/_pysu2.so || die
+   if use autodiff ; then
+   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD_AD SU2_PY/SU2_CFD_AD 
|| die
+   ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT_AD SU2_PY/SU2_DOT_AD 
|| die
+   ln -s ../../${P}-build/SU2_PY/pySU2/_pysu2ad.so 
SU2_PY/_pysu2ad.so || die
+   if use directdiff ; then
+   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD_DIRECTDIFF 
SU2_PY/SU2_CFD_DIRECTDIFF || die
+   fi
+   fi
 
export SU2_RUN="${S}/SU2_PY"
export SU2_HOME="${S}"
@@ -171,13 +180,22 @@ src_test() {
../${P}-build/UnitTests/test_driver || die
 
pushd TestCases/ || die
+   # Currently Tests always use mpi
if use mpi ; then
-#  if use tutorials ; then
-#  ${EPYTHON} tutorials.py || die
-#  fi
-   ${EPYTHON} parallel_regression.py || die
+   if use tutorials ; then
+   ${EPYTHON} tutorials.py || die
+   fi
+   if use autodiff ; then
+   ${EPYTHON} parallel_regression_AD.py || die
+   else
+   ${EPYTHON} parallel_regression.py || die
+   fi
else
-   ${EPYTHON} serial_regression.py || die
+   if use autodiff ; then
+   ${EPYTHON} serial_regression_AD.py || die
+   else
+   ${EPYTHON} serial_regression.py || die
+   fi
fi
popd || die
 }

diff --git a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch 
b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
index 176caee93..21bfdde56 100644
--- a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
+++ b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
@@ -28,26 +28,7 @@
su2_deps += cgns_dep
su2_cpp_args += '-DHAVE_CGNS'
  endif
-@@ -91,23 +92,19 @@
-   su2_deps += mpi_dep
-   su2_cpp_args +=

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2022-05-29 Thread Alessandro Barbieri

commit: ef90a22aafeff5cdb5ca28897fa3ad77b8333e15
Author: Alessandro Barbieri  gmail  com>
AuthorDate: Sun May 29 15:29:49 2022 +
Commit: Alessandro Barbieri  gmail  com>
CommitDate: Sun May 29 15:29:49 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=ef90a22a

sci-physics/SU2: fixes for tests

Closes: https://bugs.gentoo.org/848033
Signed-off-by: Alessandro Barbieri  gmail.com>

 sci-physics/SU2/SU2-7.2.0-r1.ebuild| 10 +++--
 sci-physics/SU2/files/SU2-7.2.0-fix-headers.patch  | 51 ++
 .../SU2/files/SU2-7.2.0-system-libraries.patch | 12 -
 3 files changed, 57 insertions(+), 16 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0-r1.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
index b0c8a21e9..29413cf3e 100644
--- a/sci-physics/SU2/SU2-7.2.0-r1.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
@@ -33,7 +33,7 @@ RDEPEND="
sci-libs/metis
virtual/mpi[cxx]
)
-   mpp? ( sci-libs/Mutationpp )
+   mpp? ( sci-libs/Mutationpp:= )
openblas? ( sci-libs/openblas )
parmetis? ( sci-libs/parmetis )
pastix? (
@@ -85,6 +85,7 @@ REQUIRED_USE="
mpi
|| ( openblas mkl )
)
+   test? ( mpi python )
?? ( openblas mkl )
?? ( directdiff pastix )
 "
@@ -93,6 +94,7 @@ PATCHES=(
"${FILESDIR}/${PN}-7.1.0-fix-env.patch"
"${FILESDIR}/${PN}-7.2.0-system-libraries.patch"
"${FILESDIR}/${PN}-7.2.0-DESTDIR.patch"
+   "${FILESDIR}/${PN}-7.2.0-fix-headers.patch"
 )
 
 src_unpack() {
@@ -170,9 +172,9 @@ src_test() {
 
pushd TestCases/ || die
if use mpi ; then
-   if use tutorials ; then
-   ${EPYTHON} tutorials.py || die
-   fi
+#  if use tutorials ; then
+#  ${EPYTHON} tutorials.py || die
+#  fi
${EPYTHON} parallel_regression.py || die
else
${EPYTHON} serial_regression.py || die

diff --git a/sci-physics/SU2/files/SU2-7.2.0-fix-headers.patch 
b/sci-physics/SU2/files/SU2-7.2.0-fix-headers.patch
new file mode 100644
index 0..39f26e733
--- /dev/null
+++ b/sci-physics/SU2/files/SU2-7.2.0-fix-headers.patch
@@ -0,0 +1,51 @@
+--- a/UnitTests/Common/geometry/dual_grid/CDualGrid_tests.cpp
 b/UnitTests/Common/geometry/dual_grid/CDualGrid_tests.cpp
+@@ -28,8 +28,8 @@
+ #include "catch.hpp"
+ #include 
+ #include 
+-#include "../../../Common/include/geometry/dual_grid/CEdge.hpp"
+-#include "../../../Common/include/geometry/dual_grid/CVertex.hpp"
++#include "../../../../Common/include/geometry/dual_grid/CEdge.hpp"
++#include "../../../../Common/include/geometry/dual_grid/CVertex.hpp"
+ 
+ TEST_CASE("Volume Computation", "[Dual Grid]") {
+   
+--- a/UnitTests/Common/geometry/primal_grid/CPrimalGrid_tests.cpp
 b/UnitTests/Common/geometry/primal_grid/CPrimalGrid_tests.cpp
+@@ -27,8 +27,8 @@
+ 
+ #include "catch.hpp"
+ #include 
+-#include "../../../Common/include/geometry/primal_grid/CPrimalGrid.hpp"
+-#include "../../../Common/include/geometry/primal_grid/CHexahedron.hpp"
++#include "../../../../Common/include/geometry/primal_grid/CPrimalGrid.hpp"
++#include "../../../../Common/include/geometry/primal_grid/CHexahedron.hpp"
+ 
+ TEST_CASE("Center of gravity computation", "[Primal Grid]") {
+ 
+--- a/UnitTests/test_driver.cpp
 b/UnitTests/test_driver.cpp
+@@ -31,8 +31,8 @@
+ #define CATCH_CONFIG_RUNNER
+ #include "catch.hpp"
+ 
+-#include "../../../Common/include/parallelization/mpi_structure.hpp"
+-#include "../../../Common/include/option_structure.hpp"
++#include "../Common/include/parallelization/mpi_structure.hpp"
++#include "../Common/include/option_structure.hpp"
+ 
+ int main(int argc, char *argv[]) {
+ 
+--- a/SU2_GEO/include/SU2_GEO.hpp
 b/SU2_GEO/include/SU2_GEO.hpp
+@@ -38,7 +38,7 @@
+ 
+ #include "../../Common/include/geometry/CPhysicalGeometry.hpp"
+ #include "../../Common/include/CConfig.hpp"
+-#include "../../../Common/include/grid_movement/CSurfaceMovement.hpp"
+-#include "../../../Common/include/grid_movement/CFreeFormDefBox.hpp"
++#include "../../Common/include/grid_movement/CSurfaceMovement.hpp"
++#include "../../Common/include/grid_movement/CFreeFormDefBox.hpp"
+ 
+ using namespace std;

diff --git a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch 
b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
index 3e96c4dd4..176caee93 100644
--- a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
+++ b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
@@ -152,15 +152,3 @@
  
  #include "drivers/CDriver.hpp"
  #include "drivers/CSinglezoneDriver.hpp"
 a/SU2_GEO/include/SU2_GEO.hpp
-+++ b/SU2_GEO/include/SU2_GEO.hpp
-@@ -38,7 +38,7 @@
- 
- #include "../../Common/include/geometry/CPhysicalGeometry.hpp"
- #include "../../Common/include/CConfig.hpp"
--#include "../../../Common/include/grid_movement/CSurfaceMovement.hpp"

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2022-05-28 Thread Alessandro Barbieri

commit: 932235ce7ccf64152e38a5c3c4bc2be4753abac9
Author: Alessandro Barbieri  gmail  com>
AuthorDate: Sat May 28 13:45:03 2022 +
Commit: Alessandro Barbieri  gmail  com>
CommitDate: Sat May 28 13:45:29 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=932235ce

sci-physics/SU2: enable py3.10

Signed-off-by: Alessandro Barbieri  gmail.com>

 sci-physics/SU2/SU2-7.2.0-r1.ebuild | 26 +-
 1 file changed, 17 insertions(+), 9 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0-r1.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
index 2d2ce7361..b0c8a21e9 100644
--- a/sci-physics/SU2/SU2-7.2.0-r1.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
 inherit meson python-single-r1
 
@@ -26,7 +26,7 @@ IUSE="autodiff cgns directdiff librom mixed-precision mkl 
+mpi mpp openblas open
 
 RDEPEND="
${PYTHON_DEPS}
-   cgns? ( sci-libs/cgnslib:= )
+   cgns? ( >=sci-libs/cgnslib-4 )
librom? ( sci-libs/libROM )
mkl? ( sci-libs/mkl )
mpi? (
@@ -40,21 +40,29 @@ RDEPEND="

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2022-05-27 Thread Sergey Torokhov

commit: ba236ca85175d75bad6565c607e1f9c8b96fb0a7
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Fri May 27 22:45:16 2022 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Fri May 27 22:46:28 2022 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=ba236ca8

sci-physics/SU2: fix meson.build patch

Closes: https://bugs.gentoo.org/847346

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.2.0-r1.ebuild| 1 +
 sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch | 7 ---
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.2.0-r1.ebuild 
b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
index ac28d7d53..2d2ce7361 100644
--- a/sci-physics/SU2/SU2-7.2.0-r1.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0-r1.ebuild
@@ -44,6 +44,7 @@ RDEPEND="
 "
 DEPEND="
${RDEPEND}
+   dev-cpp/catch:0
dev-cpp/cli11
 
autodiff? (

diff --git a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch 
b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
index 927ee3734..3e96c4dd4 100644
--- a/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
+++ b/sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
@@ -104,10 +104,10 @@
if p.returncode() != 0
  error(p.stdout())
endif
-@@ -280,20 +271,4 @@
+@@ -280,21 +271,3 @@
 get_option('enable-autodiff'), get_option('enable-directdiff'), 
get_option('enable-pywrapper'), get_option('enable-mkl'),
 get_option('enable-openblas'), get_option('enable-pastix'), 
get_option('enable-mixedprec'), get_option('enable-librom'), 
meson.build_root().split('/')[-1]))
- 
+-
 -if get_option('enable-mpp')
 -  message(''' To run SU2 with Mutation++ library, add these lines to your 
.bashrc file:
 -
@@ -124,7 +124,8 @@
 -  
 -  '''.format(get_option('librom_root')))
 -
- endif
+-endif
+
 --- a/SU2_CFD/include/solvers/CSolver.hpp
 +++ b/SU2_CFD/include/solvers/CSolver.hpp
 @@ -57,9 +57,9 @@

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-10-27 Thread Sergey Torokhov

commit: 85c4f567a9f07f9075c864b636f9245ed600fc49
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Oct 27 20:53:10 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Oct 27 20:53:10 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=85c4f567

sci-physics/SU2: switch to EAPI-8. Enable MPI network tests

Use EAPI-8 option PROPERTIES="test_network" to enable
network testing that is required by MPI.

Closes: https://bugs.gentoo.org/820293

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.2.0.ebuild | 8 +++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild b/sci-physics/SU2/SU2-7.2.0.ebuild
index 32027c04f..8c0012dae 100644
--- a/sci-physics/SU2/SU2-7.2.0.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0.ebuild
@@ -1,7 +1,7 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 PYTHON_COMPAT=( python3_{8..9} )
 
@@ -27,7 +27,13 @@ KEYWORDS="~amd64"
 # pastix is disabled as it's require additional external bundled libs;
 # autodiff (medi), directdiff (opti) features require additional external 
bundled libs.
 IUSE="cgns mkl +mpi mpp openblas parmetis tecio test tutorials"
+
+# Tests fail with FEATURES="network-sandbox" for most versions of openmpi and 
mpich it with error:
+# "No network interfaces were found for out-of-band communications.
+#  We require at least one available network for out-of-band messaging."
+PROPERTIES="test_network"
 RESTRICT="!test? ( test )"
+
 REQUIRED_USE="
${PYTHON_REQUIRED_USE}
mkl? ( !openblas )

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-10-24 Thread Sergey Torokhov

commit: 584e239fa636150d6680c82fb0a21c7a764ba650
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sun Oct 24 20:56:36 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sun Oct 24 21:05:57 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=584e239f

sci-physics/SU2: restrict with MPI 3.1 impl. Add custom-mpi option

Meson.build script isn't properly detect mpich as MPI impl.,
therefore meson option 'custom-mpi' is used now with export
of CC=mpicc and CXX=mpicxx as compilers.

Mpi implementations is restricted with MPI 3.1 within ebuild.

FEATURES="-network-sandbox" could be required to run tests
for some mpi implementations/versions.

Closes: https://bugs.gentoo.org/819060

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.2.0.ebuild | 8 +++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild b/sci-physics/SU2/SU2-7.2.0.ebuild
index 7b3091907..32027c04f 100644
--- a/sci-physics/SU2/SU2-7.2.0.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0.ebuild
@@ -35,7 +35,7 @@ REQUIRED_USE="
 
 RDEPEND="
${PYTHON_DEPS}
-   mpi? ( virtual/mpi[cxx] )
+   mpi? ( || ( >=sys-cluster/openmpi-1.10.7[cxx] 
>=sys-cluster/mpich-3.3[cxx] ) )
mkl? ( sci-libs/mkl )
openblas? ( sci-libs/openblas )
 "
@@ -87,6 +87,11 @@ src_prepare(){
 }
 
 src_configure() {
+   if use mpi ; then
+   export CC=mpicc
+   export CXX=mpicxx
+   fi
+
local emesonargs=(
-Denable-autodiff=false
-Denable-directdiff=false
@@ -94,6 +99,7 @@ src_configure() {
-Denable-pywrapper=false
-Dwith-omp=false
$(meson_feature mpi with-mpi)
+   $(meson_use mpi custom-mpi)
$(meson_use cgns enable-cgns)
$(meson_use mkl enable-mkl)
$(meson_use mpp enable-mpp)

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-10-15 Thread Sergey Torokhov

commit: 5893ea57d8065fd5fb57894af204056759f0d7e7
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Fri Oct 15 16:19:37 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Fri Oct 15 16:19:37 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=5893ea57

sci-physics/SU2: drop old

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest |   3 -
 sci-physics/SU2/SU2-7.1.1.ebuild | 137 ---
 2 files changed, 140 deletions(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index d50e3c990..3b721ab82 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,6 +1,3 @@
-DIST SU2-7.1.1-TestCases.tar.gz 453640460 BLAKE2B 
661349f1690eda1f9c4438a0c03c59d4bab7a1e49965a94d1e3ba6fe54ab5f14c9eae0ae93d5027068d5d02465af72cc39e8a4319de6b888d01b0e353a2bf296
 SHA512 
8a30160b9c6d7f2d23c7cd88e089bcefa98b1fdeeef43060da4fe4840a7061e790f250c656b44f2e491108cf5c2701fd0dbad67e651db3d59a79f8e521c2e36d
-DIST SU2-7.1.1-Tutorials.tar.gz 71446250 BLAKE2B 
30d4f9dda28958da80617d5ddcf635304c19f7de68a1bd5dd52ac7df84bf643d028c2ee8d2e3425f4d8a4faa06e8ed95150c51293629453c0b27101c33278a1f
 SHA512 
7f38588effa471f705c297c5a9fb6bca344932224453cb46021a715b58f9a0d45e16edb73df9a2a079dd7bd7909bbf0236fc0dc2df11b88bfb6f3a6c7769fdfe
-DIST SU2-7.1.1.tar.gz 20553973 BLAKE2B 
a8c7f851cf570c08c345725e6660fc84683a4a7b6982edc586661847dc0b0db06f1825170afc34d85adced512c5272a0632005838ae6952be4265eb05c921bab
 SHA512 
5980c2a24821d5e8cc83a953377d2779a158da30b6c1d2ef5db8a2b4f7a2ba555d5a35d755216a5c860e48e97b325f9687f3b2bd0c741b2d21bbcfcd31689ea9
 DIST SU2-7.2.0-TestCases.tar.gz 464156192 BLAKE2B 
405a5ccdd13bc5109feca1462b6ac434a4d817adbaca964465678683d5593fa940579e364e33414da5f059a89b2919fbc0baed82967246356da49c87ac9ce63f
 SHA512 
d75894c285ac7cb4c72eece10a02f014fb2d85b585c08d1a9bbf12ab51f6004be99c368bde98734891dc45446d0656b21317b50d7d14af95b6ce4bfe72871f11
 DIST SU2-7.2.0-Tutorials.tar.gz 72845754 BLAKE2B 
ef670a77d0189e9fd8ad48d96bd4617de558311d0df0d81a10dd3cbf8b97b7fbcb0e6725746d8451ce12a923f6895a392582fa980f4054b3b1306609431900ff
 SHA512 
c91cfbdfb26169fc36575f60ec3133ea4a6f39c8433e276840a0f96c7508f3ee898020179ac01d606da9c5e10ee2ad263a642ff6f6b7400d75f4eb03ee7e1cf8
 DIST SU2-7.2.0.tar.gz 15356101 BLAKE2B 
e52f09d0451c200f6fd6874d55bedf7733f934cb2cee378ca286107960bd82332adc932cae57e9052654b34972717a4f8969db216acdcef8a6816b648119df94
 SHA512 
5600ebb97ef5939333907f75cda58a02810642439309fc8626ed974dfbfaffdf0cd7d9cc81de310cb12e6f92f98b64c58d607ad93095bd86cc583768947ccf6b

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
deleted file mode 100644
index 899b5d72f..0
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ /dev/null
@@ -1,137 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{8..9} )
-
-inherit meson python-single-r1
-
-DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
-HOMEPAGE="https://su2code.github.io/;
-SRC_URI="
-   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
-   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
-   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
-   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
-"
-
-# SU2: LGPL-2.1; cgnslib: ZLIB, TecIO: all-rights-reserved;
-# Metis: Apache-2.0; Parmetis: all-rights-reserved, free-noncomm; Mutationpp: 
LGPL-3.0.
-LICENSE="Apache-2.0 LGPL-2.1 LGPL-3 ZLIB all-rights-reserved free-noncomm"
-SLOT="0"
-KEYWORDS="~amd64"
-
-# cgns, metis, parmetis are bundled;
-# omp is disable as it's experimental;
-# pastix is disabled as it's try to find bundled libs;
-IUSE="cgns mkl +mpi mpp openblas tecio test tutorials"
-RESTRICT="!test? ( test )"
-REQUIRED_USE="
-   ${PYTHON_REQUIRED_USE}
-   mkl? ( !openblas )
-"
-
-RDEPEND="
-   ${PYTHON_DEPS}
-   mpi? ( virtual/mpi[cxx] )
-   mkl? ( sci-libs/mkl )
-   openblas? ( sci-libs/openblas )
-"
-DEPEND="
-   ${RDEPEND}
-   tecio? ( dev-libs/boost:= )
-"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=(
-   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
-   "${FILESDIR}/${PN}-7.1.0-fix-env.patch"
-)
-
-DOCS=( "README.md" "SU2_PY/documentation.txt" )
-
-src_unpack() {
-   unpack "${P}.tar.gz"
-   if use mpp ; then
-   einfo "Unpacking mutationpp-1.0.1.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/subprojects/Mutationpp"
-   tar -C "${P}"/subprojects/Mutationpp --strip-components=1 -xzf 
"${DISTDIR}/mutationpp-1.0.1.tar.gz" || die
-   fi
-   if use test ; then
-   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
-   tar -C "${P}"/TestCases

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-09-15 Thread Sergey Torokhov

commit: 8dc8d4025018d2db2c1ceffdfa6a3f1daec872a8
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Sep 15 21:37:23 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Sep 15 21:37:23 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=8dc8d402

sci-physics/SU2: Disable pywrapper tests. Fix axi_visccone test

USE="tutorials" tests now run before parallel_regression.py tests
as turorials tests have no fails currently.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.1.1.ebuild |  5 -
 sci-physics/SU2/SU2-7.2.0.ebuild | 10 +-
 2 files changed, 13 insertions(+), 2 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
index 87b3d2328..899b5d72f 100644
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -74,6 +74,9 @@ src_prepare(){
if has_version ">=dev-libs/boost-1.75.0" ; then
sed -i -e 's:cpp_std=c++11:cpp_std=c++14:' meson.build || die
fi
+
+   # Disable python-wrapper tests
+   sed -i "/append(pywrapper_/s/./#&/" TestCases/parallel_regression.py || 
die
 }
 
 src_configure() {
@@ -111,10 +114,10 @@ src_test() {
 
pushd TestCases/ || die
if use mpi ; then
-   ${EPYTHON} parallel_regression.py || die
if use tutorials ; then
${EPYTHON} tutorials.py || die
fi
+   ${EPYTHON} parallel_regression.py || die
else
${EPYTHON} serial_regression.py || die
fi

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild b/sci-physics/SU2/SU2-7.2.0.ebuild
index e211c5388..7b3091907 100644
--- a/sci-physics/SU2/SU2-7.2.0.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0.ebuild
@@ -76,6 +76,14 @@ src_prepare(){
 
# Force Disable parmetis support in meson.build (configure.ac has 
optional switch)
use !parmetis && { sed -i -e "/parmetis/Id" meson.build || die ; }
+
+   # Disable python-wrapper tests
+   sed -i "/append(pywrapper_/s/./#&/" TestCases/parallel_regression.py || 
die
+
+   # Copy absence mesh file
+   if use test ; then
+   cp "${S}/TestCases/nonequilibrium/viscwedge/viscwedge.su2" 
"${S}/TestCases/nonequilibrium/axi_visccone/" || die
+   fi
 }
 
 src_configure() {
@@ -113,10 +121,10 @@ src_test() {
 
pushd TestCases/ || die
if use mpi ; then
-   ${EPYTHON} parallel_regression.py || die
if use tutorials ; then
${EPYTHON} tutorials.py || die
fi
+   ${EPYTHON} parallel_regression.py || die
else
${EPYTHON} serial_regression.py || die
fi

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-09-05 Thread Sergey Torokhov

commit: 6e5b0fc2e48d639cda21b7f313085ed3024f2cf3
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sun Sep  5 10:43:39 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sun Sep  5 10:43:39 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=6e5b0fc2

sci-physics/SU2: replace 'python' with '${EPYTHON}'. Add 'die' commands

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.1.1.ebuild | 29 +
 sci-physics/SU2/SU2-7.2.0.ebuild | 29 +
 2 files changed, 34 insertions(+), 24 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
index 4817101c3..87b3d2328 100644
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -95,11 +95,11 @@ src_configure() {
 }
 
 src_test() {
-   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD SU2_PY/SU2_CFD
-   ln -s ../../${P}-build/SU2_DEF/src/SU2_DEF SU2_PY/SU2_DEF
-   ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT
-   ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO
-   ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL
+   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD SU2_PY/SU2_CFD || die
+   ln -s ../../${P}-build/SU2_DEF/src/SU2_DEF SU2_PY/SU2_DEF || die
+   ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT || die
+   ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO || die
+   ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL || die
 
export SU2_RUN="${S}/SU2_PY"
export SU2_HOME="${S}"
@@ -107,13 +107,18 @@ src_test() {
export PYTHONPATH=$PYTHONPATH:$SU2_RUN
 
einfo "Running UnitTests ..."
-   ../${P}-build/UnitTests/test_driver
-
-   pushd TestCases/
-   use mpi && python parallel_regression.py
-   use mpi || python serial_regression.py
-   use tutorials && use mpi && python tutorials.py
-   popd
+   ../${P}-build/UnitTests/test_driver || die
+
+   pushd TestCases/ || die
+   if use mpi ; then
+   ${EPYTHON} parallel_regression.py || die
+   if use tutorials ; then
+   ${EPYTHON} tutorials.py || die
+   fi
+   else
+   ${EPYTHON} serial_regression.py || die
+   fi
+   popd || die
 }
 
 src_install() {

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild b/sci-physics/SU2/SU2-7.2.0.ebuild
index 84dfe6e00..e211c5388 100644
--- a/sci-physics/SU2/SU2-7.2.0.ebuild
+++ b/sci-physics/SU2/SU2-7.2.0.ebuild
@@ -97,11 +97,11 @@ src_configure() {
 }
 
 src_test() {
-   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD SU2_PY/SU2_CFD
-   ln -s ../../${P}-build/SU2_DEF/src/SU2_DEF SU2_PY/SU2_DEF
-   ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT
-   ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO
-   ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL
+   ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD SU2_PY/SU2_CFD || die
+   ln -s ../../${P}-build/SU2_DEF/src/SU2_DEF SU2_PY/SU2_DEF || die
+   ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT || die
+   ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO || die
+   ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL || die
 
export SU2_RUN="${S}/SU2_PY"
export SU2_HOME="${S}"
@@ -109,13 +109,18 @@ src_test() {
export PYTHONPATH=$PYTHONPATH:$SU2_RUN
 
einfo "Running UnitTests ..."
-   ../${P}-build/UnitTests/test_driver
-
-   pushd TestCases/
-   use mpi && python parallel_regression.py
-   use mpi || python serial_regression.py
-   use tutorials && use mpi && python tutorials.py
-   popd
+   ../${P}-build/UnitTests/test_driver || die
+
+   pushd TestCases/ || die
+   if use mpi ; then
+   ${EPYTHON} parallel_regression.py || die
+   if use tutorials ; then
+   ${EPYTHON} tutorials.py || die
+   fi
+   else
+   ${EPYTHON} serial_regression.py || die
+   fi
+   popd || die
 }
 
 src_install() {

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-08-31 Thread Sergey Torokhov

commit: 2ad0e8d212342dc865f04cec8ce8fba3b64006fc
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Tue Aug 31 14:01:55 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Tue Aug 31 14:06:37 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=2ad0e8d2

sci-physics/SU2: 7.2.0 version bump

Parmetis has free-non-comm licence type and as configure.ac
has explicit configuration option for this therefore
the USE="parmetis" introduced with forced removing of parmetis
enabling from meson.build file in scr-prepare phase.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest |   3 +
 sci-physics/SU2/SU2-7.2.0.ebuild | 131 +++
 sci-physics/SU2/metadata.xml |   1 +
 3 files changed, 135 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 7148f13f0..d50e3c990 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,4 +1,7 @@
 DIST SU2-7.1.1-TestCases.tar.gz 453640460 BLAKE2B 
661349f1690eda1f9c4438a0c03c59d4bab7a1e49965a94d1e3ba6fe54ab5f14c9eae0ae93d5027068d5d02465af72cc39e8a4319de6b888d01b0e353a2bf296
 SHA512 
8a30160b9c6d7f2d23c7cd88e089bcefa98b1fdeeef43060da4fe4840a7061e790f250c656b44f2e491108cf5c2701fd0dbad67e651db3d59a79f8e521c2e36d
 DIST SU2-7.1.1-Tutorials.tar.gz 71446250 BLAKE2B 
30d4f9dda28958da80617d5ddcf635304c19f7de68a1bd5dd52ac7df84bf643d028c2ee8d2e3425f4d8a4faa06e8ed95150c51293629453c0b27101c33278a1f
 SHA512 
7f38588effa471f705c297c5a9fb6bca344932224453cb46021a715b58f9a0d45e16edb73df9a2a079dd7bd7909bbf0236fc0dc2df11b88bfb6f3a6c7769fdfe
 DIST SU2-7.1.1.tar.gz 20553973 BLAKE2B 
a8c7f851cf570c08c345725e6660fc84683a4a7b6982edc586661847dc0b0db06f1825170afc34d85adced512c5272a0632005838ae6952be4265eb05c921bab
 SHA512 
5980c2a24821d5e8cc83a953377d2779a158da30b6c1d2ef5db8a2b4f7a2ba555d5a35d755216a5c860e48e97b325f9687f3b2bd0c741b2d21bbcfcd31689ea9
+DIST SU2-7.2.0-TestCases.tar.gz 464156192 BLAKE2B 
405a5ccdd13bc5109feca1462b6ac434a4d817adbaca964465678683d5593fa940579e364e33414da5f059a89b2919fbc0baed82967246356da49c87ac9ce63f
 SHA512 
d75894c285ac7cb4c72eece10a02f014fb2d85b585c08d1a9bbf12ab51f6004be99c368bde98734891dc45446d0656b21317b50d7d14af95b6ce4bfe72871f11
+DIST SU2-7.2.0-Tutorials.tar.gz 72845754 BLAKE2B 
ef670a77d0189e9fd8ad48d96bd4617de558311d0df0d81a10dd3cbf8b97b7fbcb0e6725746d8451ce12a923f6895a392582fa980f4054b3b1306609431900ff
 SHA512 
c91cfbdfb26169fc36575f60ec3133ea4a6f39c8433e276840a0f96c7508f3ee898020179ac01d606da9c5e10ee2ad263a642ff6f6b7400d75f4eb03ee7e1cf8
+DIST SU2-7.2.0.tar.gz 15356101 BLAKE2B 
e52f09d0451c200f6fd6874d55bedf7733f934cb2cee378ca286107960bd82332adc932cae57e9052654b34972717a4f8969db216acdcef8a6816b648119df94
 SHA512 
5600ebb97ef5939333907f75cda58a02810642439309fc8626ed974dfbfaffdf0cd7d9cc81de310cb12e6f92f98b64c58d607ad93095bd86cc583768947ccf6b
 DIST mutationpp-1.0.1.tar.gz 4021945 BLAKE2B 
caae3ca155541a36822a950047efb867aab098bc9db311d675acca272d7f317ff35524086a0ea5eda524bbe125e4874f41dc1dbad92bfee4387e3a0c649bbd0a
 SHA512 
ba8beeb7cdaf1b526571e27f745d8d53c1e20a96bd194a5949acb8b6d5f75553867158a63bfc7198502177a9e8a91bf82a67d450a3ba72b21f8490539f45ef01

diff --git a/sci-physics/SU2/SU2-7.2.0.ebuild b/sci-physics/SU2/SU2-7.2.0.ebuild
new file mode 100644
index 0..84dfe6e00
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.2.0.ebuild
@@ -0,0 +1,131 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{8..9} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+# SU2: LGPL-2.1; cgnslib: ZLIB, TecIO: all-rights-reserved;
+# Metis: Apache-2.0; Parmetis: all-rights-reserved, free-noncomm; Mutationpp: 
LGPL-3.0.
+LICENSE="Apache-2.0 LGPL-2.1 LGPL-3 ZLIB all-rights-reserved free-noncomm"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's require additional external bundled libs;
+# autodiff (medi), directdiff (opti) features require additional external 
bundled libs.
+IUSE="cgns mkl +mpi mpp openblas parmetis tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( >=dev-libs/boost-1.76.0:= )
+"

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-08-31 Thread Sergey Torokhov

commit: 45a78f0f3225bd116211894e6f19eeffb68d5e90
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Tue Aug 31 13:58:33 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Tue Aug 31 14:06:19 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=45a78f0f

sci-physics/SU2: update LICENSE set and PYTHON_COMPAT

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/SU2-7.1.1.ebuild | 6 --
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
index a10b2a489..4817101c3 100644
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..9} )
 
 inherit meson python-single-r1
 
@@ -16,7 +16,9 @@ SRC_URI="
tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
 "
 
-LICENSE="LGPL-2.1"
+# SU2: LGPL-2.1; cgnslib: ZLIB, TecIO: all-rights-reserved;
+# Metis: Apache-2.0; Parmetis: all-rights-reserved, free-noncomm; Mutationpp: 
LGPL-3.0.
+LICENSE="Apache-2.0 LGPL-2.1 LGPL-3 ZLIB all-rights-reserved free-noncomm"
 SLOT="0"
 KEYWORDS="~amd64"

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-05-30 Thread Andrew Ammerlaan

commit: 191b8e50a82197ce23904c2cef882953271367b9
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Sun May 30 15:58:05 2021 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Sun May 30 15:58:05 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=191b8e50

sci-physics/SU2: fix BadDefaultUseFlags

Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan  gentoo.org>

 sci-physics/SU2/SU2-7.1.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
index 49799f412..a10b2a489 100644
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -23,7 +23,7 @@ KEYWORDS="~amd64"
 # cgns, metis, parmetis are bundled;
 # omp is disable as it's experimental;
 # pastix is disabled as it's try to find bundled libs;
-IUSE="cgns -mkl +mpi mpp openblas tecio test tutorials"
+IUSE="cgns mkl +mpi mpp openblas tecio test tutorials"
 RESTRICT="!test? ( test )"
 REQUIRED_USE="
${PYTHON_REQUIRED_USE}

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-03-28 Thread Andrew Ammerlaan

commit: 5f828672da60d30f9bc59f39ed4a547dc6ca1717
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Sun Mar 28 10:45:54 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Sun Mar 28 10:45:54 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=5f828672

sci-physics/SU2: fix DoublePrefixInPath

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-physics/SU2/SU2-7.1.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
index f4ad34dd9..49799f412 100644
--- a/sci-physics/SU2/SU2-7.1.1.ebuild
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -116,8 +116,8 @@ src_test() {
 
 src_install() {
meson_src_install
-   mkdir -p "${ED}$(python_get_sitedir)" || die
-   mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran,*.py} -t 
"${ED}$(python_get_sitedir)" || die
+   mkdir -p "${D}$(python_get_sitedir)" || die
+   mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran,*.py} -t 
"${D}$(python_get_sitedir)" || die
python_optimize "${D}/$(python_get_sitedir)"
 
if use tutorials ; then

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-03-22 Thread Sergey Torokhov

commit: 4f15d50c3efc79bbaae115bf6af576568564b8b9
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Mon Mar 22 20:13:58 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Mon Mar 22 20:13:58 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=4f15d50c

sci-physics/SU2: drop old 7.1.0

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest |   3 -
 sci-physics/SU2/SU2-7.1.0.ebuild | 119 ---
 2 files changed, 122 deletions(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 9fc17003..7148f13f 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,6 +1,3 @@
-DIST SU2-7.1.0-TestCases.tar.gz 449701778 BLAKE2B 
8a7cb400d330b4bbf62023525e6009a8c05af5a375b7479087b3b579d7f3162a11091f09294381fcd11d7bc358e77f10f69efc0999a304135f8850e3fe005000
 SHA512 
a0e354b073b4cfaeb47a9bd33ac66a636b12a065ca7caff4bd50c54e2b191809fd463f980568e0b7d4d559714d2dca99fe9a3e5854aa345be24010cd1239e772
-DIST SU2-7.1.0-Tutorials.tar.gz 66570840 BLAKE2B 
fdbc23503abd7a250464ca8da52ab87f67069d2a3fca130038c1ea83c3b18aa476fed3a21f725b142a97923b101d7906a720f6dff28341a13915ed6216660d7f
 SHA512 
7843a7ed5b3c606ea9821745390c70bbfd3cb66a17494360b4139e8735a8e83546acd0912462b7fc3b63ff9f2097610294c1c9af25d104962f727f599cdb8ae9
-DIST SU2-7.1.0.tar.gz 20542933 BLAKE2B 
e6e6d82a990bf4043d1c6c58a5fe7a100a923b2c6ae6a29f7bb969e02279eeb5587f7930b2372cf67e26f451c598cf81e2515eeb7e516d6ab060ac7e986a0110
 SHA512 
309b4e06c5fc084ea2a06797ae400392b924c3654d354170c3159327c9e022081745bee28b1537ed3ad4e7c1333afb8c38a1ca033ff28662b8d5f5badfdc8465
 DIST SU2-7.1.1-TestCases.tar.gz 453640460 BLAKE2B 
661349f1690eda1f9c4438a0c03c59d4bab7a1e49965a94d1e3ba6fe54ab5f14c9eae0ae93d5027068d5d02465af72cc39e8a4319de6b888d01b0e353a2bf296
 SHA512 
8a30160b9c6d7f2d23c7cd88e089bcefa98b1fdeeef43060da4fe4840a7061e790f250c656b44f2e491108cf5c2701fd0dbad67e651db3d59a79f8e521c2e36d
 DIST SU2-7.1.1-Tutorials.tar.gz 71446250 BLAKE2B 
30d4f9dda28958da80617d5ddcf635304c19f7de68a1bd5dd52ac7df84bf643d028c2ee8d2e3425f4d8a4faa06e8ed95150c51293629453c0b27101c33278a1f
 SHA512 
7f38588effa471f705c297c5a9fb6bca344932224453cb46021a715b58f9a0d45e16edb73df9a2a079dd7bd7909bbf0236fc0dc2df11b88bfb6f3a6c7769fdfe
 DIST SU2-7.1.1.tar.gz 20553973 BLAKE2B 
a8c7f851cf570c08c345725e6660fc84683a4a7b6982edc586661847dc0b0db06f1825170afc34d85adced512c5272a0632005838ae6952be4265eb05c921bab
 SHA512 
5980c2a24821d5e8cc83a953377d2779a158da30b6c1d2ef5db8a2b4f7a2ba555d5a35d755216a5c860e48e97b325f9687f3b2bd0c741b2d21bbcfcd31689ea9

diff --git a/sci-physics/SU2/SU2-7.1.0.ebuild b/sci-physics/SU2/SU2-7.1.0.ebuild
deleted file mode 100644
index 0357fd63..
--- a/sci-physics/SU2/SU2-7.1.0.ebuild
+++ /dev/null
@@ -1,119 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit meson python-single-r1
-
-DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
-HOMEPAGE="https://su2code.github.io/;
-SRC_URI="
-   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
-   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
-   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
-   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
-"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-
-# cgns, metis, parmetis are bundled;
-# omp is disable as it's experimental;
-# pastix is disabled as it's try to find bundled libs;
-IUSE="cgns -mkl +mpi mpp openblas tecio test tutorials"
-RESTRICT="!test? ( test )"
-REQUIRED_USE="
-   ${PYTHON_REQUIRED_USE}
-   mkl? ( !openblas )
-"
-
-RDEPEND="
-   ${PYTHON_DEPS}
-   mpi? ( virtual/mpi[cxx] )
-   mkl? ( sci-libs/mkl )
-   openblas? ( sci-libs/openblas )
-"
-DEPEND="
-   ${RDEPEND}
-   tecio? ( dev-libs/boost:= )
-"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=(
-   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
-   "${FILESDIR}/${P}-fix-env.patch"
-)
-
-DOCS=( "README.md" "SU2_PY/documentation.txt" )
-
-src_unpack() {
-   unpack "${P}.tar.gz"
-   if use mpp ; then
-   einfo "Unpacking mutationpp-1.0.1.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/subprojects/Mutationpp"
-   tar -C "${P}"/subprojects/Mutationpp --strip-components=1 -xzf 
"${DISTDIR}/mutationpp-1.0.1.tar.gz" || die
-   fi
-   if use test ; then
-   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
-   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${P}-TestCases.tar.gz" || die
-   fi
-   if use tutorials ; then
-   einfo "Unpacking ${P}-Tutorials.tar.gz to

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-03-10 Thread Sergey Torokhov

commit: 9ae1019ee4e64113279f8b47830e7389944ff17c
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Mar 10 20:00:19 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Mar 10 20:00:19 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=9ae1019e

sci-physics/SU2: 7.1.1 version bump

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest |   3 +
 sci-physics/SU2/SU2-7.1.1.ebuild | 127 +++
 2 files changed, 130 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index dbfba89b..c5fb9ec1 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -5,4 +5,7 @@ DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b
 DIST SU2-7.1.0-TestCases.tar.gz 449701778 BLAKE2B 
8a7cb400d330b4bbf62023525e6009a8c05af5a375b7479087b3b579d7f3162a11091f09294381fcd11d7bc358e77f10f69efc0999a304135f8850e3fe005000
 SHA512 
a0e354b073b4cfaeb47a9bd33ac66a636b12a065ca7caff4bd50c54e2b191809fd463f980568e0b7d4d559714d2dca99fe9a3e5854aa345be24010cd1239e772
 DIST SU2-7.1.0-Tutorials.tar.gz 66570840 BLAKE2B 
fdbc23503abd7a250464ca8da52ab87f67069d2a3fca130038c1ea83c3b18aa476fed3a21f725b142a97923b101d7906a720f6dff28341a13915ed6216660d7f
 SHA512 
7843a7ed5b3c606ea9821745390c70bbfd3cb66a17494360b4139e8735a8e83546acd0912462b7fc3b63ff9f2097610294c1c9af25d104962f727f599cdb8ae9
 DIST SU2-7.1.0.tar.gz 20542933 BLAKE2B 
e6e6d82a990bf4043d1c6c58a5fe7a100a923b2c6ae6a29f7bb969e02279eeb5587f7930b2372cf67e26f451c598cf81e2515eeb7e516d6ab060ac7e986a0110
 SHA512 
309b4e06c5fc084ea2a06797ae400392b924c3654d354170c3159327c9e022081745bee28b1537ed3ad4e7c1333afb8c38a1ca033ff28662b8d5f5badfdc8465
+DIST SU2-7.1.1-TestCases.tar.gz 453640460 BLAKE2B 
661349f1690eda1f9c4438a0c03c59d4bab7a1e49965a94d1e3ba6fe54ab5f14c9eae0ae93d5027068d5d02465af72cc39e8a4319de6b888d01b0e353a2bf296
 SHA512 
8a30160b9c6d7f2d23c7cd88e089bcefa98b1fdeeef43060da4fe4840a7061e790f250c656b44f2e491108cf5c2701fd0dbad67e651db3d59a79f8e521c2e36d
+DIST SU2-7.1.1-Tutorials.tar.gz 71446250 BLAKE2B 
30d4f9dda28958da80617d5ddcf635304c19f7de68a1bd5dd52ac7df84bf643d028c2ee8d2e3425f4d8a4faa06e8ed95150c51293629453c0b27101c33278a1f
 SHA512 
7f38588effa471f705c297c5a9fb6bca344932224453cb46021a715b58f9a0d45e16edb73df9a2a079dd7bd7909bbf0236fc0dc2df11b88bfb6f3a6c7769fdfe
+DIST SU2-7.1.1.tar.gz 20553973 BLAKE2B 
a8c7f851cf570c08c345725e6660fc84683a4a7b6982edc586661847dc0b0db06f1825170afc34d85adced512c5272a0632005838ae6952be4265eb05c921bab
 SHA512 
5980c2a24821d5e8cc83a953377d2779a158da30b6c1d2ef5db8a2b4f7a2ba555d5a35d755216a5c860e48e97b325f9687f3b2bd0c741b2d21bbcfcd31689ea9
 DIST mutationpp-1.0.1.tar.gz 4021945 BLAKE2B 
caae3ca155541a36822a950047efb867aab098bc9db311d675acca272d7f317ff35524086a0ea5eda524bbe125e4874f41dc1dbad92bfee4387e3a0c649bbd0a
 SHA512 
ba8beeb7cdaf1b526571e27f745d8d53c1e20a96bd194a5949acb8b6d5f75553867158a63bfc7198502177a9e8a91bf82a67d450a3ba72b21f8490539f45ef01

diff --git a/sci-physics/SU2/SU2-7.1.1.ebuild b/sci-physics/SU2/SU2-7.1.1.ebuild
new file mode 100644
index ..f4ad34dd
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.1.1.ebuild
@@ -0,0 +1,127 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7..9} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi mpp openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+   "${FILESDIR}/${PN}-7.1.0-fix-env.patch"
+)
+
+DOCS=( "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use mpp ; then
+   einfo "Unpacking mutationpp-1.0.1.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/subprojects/Mutationpp"
+   tar -C "${P}"/subprojects/Mutationpp --strip-components=1 -xzf 
"${DISTDIR}/mutationpp-1.0.1.tar.gz" ||

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2021-03-10 Thread Sergey Torokhov

commit: 4f6a6e7e7832087550137e56580251d7e3f7ca58
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Mar 10 20:02:19 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Mar 10 20:02:19 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=4f6a6e7e

sci-physics/SU2: drop old 7.0.8

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest  |   4 -
 sci-physics/SU2/SU2-7.0.8-r1.ebuild   | 115 --
 sci-physics/SU2/files/SU2-7.0.8-fix-env.patch |  12 ---
 3 files changed, 131 deletions(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index c5fb9ec1..9fc17003 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,7 +1,3 @@
-DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7bef36a40986f4f715da46d91f851eb59390329433c6941a280eca34ad675633b2f1b01a897d1db8d177a5c4f770b286d0625
 SHA512 
0884b4f750dbcfd3f2cb0e71d6005932e4edd90a50fa84eb484f6c0c523930ddebfb3ed4315161b8fdeff911a52fa72b6d79739c8e19cd634b9823e007520213
-DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
-DIST SU2-7.0.8-fix-python-optimize.patch 104379 BLAKE2B 
e2cb9f58af5f600f25d01a082b55a344d3b05c455d44cfcb3370fc77546b6821d616e80f577b7af4b19ad519f086495eb6f6bde1f1712451ac477d6dd538fa0e
 SHA512 
f21ed5fc1e61b78f3858a162a899c552777143118f05db009247c6224b06b922b6280de5725726afe21a3283a18ad9c38fc1c65dadb709d440e10cf3fe754d8c
-DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9
 DIST SU2-7.1.0-TestCases.tar.gz 449701778 BLAKE2B 
8a7cb400d330b4bbf62023525e6009a8c05af5a375b7479087b3b579d7f3162a11091f09294381fcd11d7bc358e77f10f69efc0999a304135f8850e3fe005000
 SHA512 
a0e354b073b4cfaeb47a9bd33ac66a636b12a065ca7caff4bd50c54e2b191809fd463f980568e0b7d4d559714d2dca99fe9a3e5854aa345be24010cd1239e772
 DIST SU2-7.1.0-Tutorials.tar.gz 66570840 BLAKE2B 
fdbc23503abd7a250464ca8da52ab87f67069d2a3fca130038c1ea83c3b18aa476fed3a21f725b142a97923b101d7906a720f6dff28341a13915ed6216660d7f
 SHA512 
7843a7ed5b3c606ea9821745390c70bbfd3cb66a17494360b4139e8735a8e83546acd0912462b7fc3b63ff9f2097610294c1c9af25d104962f727f599cdb8ae9
 DIST SU2-7.1.0.tar.gz 20542933 BLAKE2B 
e6e6d82a990bf4043d1c6c58a5fe7a100a923b2c6ae6a29f7bb969e02279eeb5587f7930b2372cf67e26f451c598cf81e2515eeb7e516d6ab060ac7e986a0110
 SHA512 
309b4e06c5fc084ea2a06797ae400392b924c3654d354170c3159327c9e022081745bee28b1537ed3ad4e7c1333afb8c38a1ca033ff28662b8d5f5badfdc8465

diff --git a/sci-physics/SU2/SU2-7.0.8-r1.ebuild 
b/sci-physics/SU2/SU2-7.0.8-r1.ebuild
deleted file mode 100644
index f7e5b83f..
--- a/sci-physics/SU2/SU2-7.0.8-r1.ebuild
+++ /dev/null
@@ -1,115 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit meson python-single-r1
-
-DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
-HOMEPAGE="https://su2code.github.io/;
-SRC_URI="
-   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
-   
https://github.com/band-a-prend/gentoo-overlay/raw/master/sci-physics/${PN}/files/${P}-fix-python-optimize.patch
-   test? ( https://github.com/su2code/TestCases/archive/v7.0.7.tar.gz -> 
${PN}-7.0.7-TestCases.tar.gz )
-   tutorials? ( https://github.com/su2code/Tutorials/archive/v7.0.7.tar.gz 
-> ${PN}-7.0.7-Tutorials.tar.gz )
-"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-
-# cgns, metis, parmetis are bundled;
-# omp is disable as it's experimental;
-# pastix is disabled as it's try to find bundled libs;
-IUSE="cgns -mkl +mpi openblas tecio test tutorials"
-RESTRICT="!test? ( test )"
-REQUIRED_USE="
-   ${PYTHON_REQUIRED_USE}
-   mkl? ( !openblas )
-"
-
-RDEPEND="
-   ${PYTHON_DEPS}
-   mpi? ( virtual/mpi[cxx] )
-   mkl? ( sci-libs/mkl )
-   openblas? ( sci-libs/openblas )
-"
-DEPEND="
-   ${RDEPEND}
-   tecio? ( dev-libs/boost:= )
-"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=(
-   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
-   "${FILESDIR}/${P}-fix-env.patch"
-   "${DISTDIR}/${P}-fix-python-optimize.patch"
-)
-
-DOCS=( "README.md" "SU2_PY/documentation.txt" )
-
-src_unpack() {
-   unpack "${P}.tar.gz"
-   if use test ; then
-   einfo "Unpacking ${PN}-7.0.7-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
-   tar -C "${P}"/TestCases

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2021-02-13 Thread Sergey Torokhov

commit: b1b0e1abfa3b87eb3c603a33d3cbf984f5e2274a
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sat Feb 13 12:26:26 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sat Feb 13 12:29:42 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=b1b0e1ab

sci-physics/SU2: 7.1.0 version bump

Fix python optimized patch isn't required now.

Add optional bundled Mutation++ library support via USE="mpp"
(Mutation++: MUlticomponent Thermodynamic
And Transport properties for IONized gases in C++).
This library could be packaged later to unbundle it.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest  |   4 +
 sci-physics/SU2/SU2-7.1.0.ebuild  | 119 ++
 sci-physics/SU2/files/SU2-7.1.0-fix-env.patch |  12 +++
 sci-physics/SU2/metadata.xml  |   1 +
 4 files changed, 136 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 7a4bd55d..dbfba89b 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -2,3 +2,7 @@ DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7be
 DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
 DIST SU2-7.0.8-fix-python-optimize.patch 104379 BLAKE2B 
e2cb9f58af5f600f25d01a082b55a344d3b05c455d44cfcb3370fc77546b6821d616e80f577b7af4b19ad519f086495eb6f6bde1f1712451ac477d6dd538fa0e
 SHA512 
f21ed5fc1e61b78f3858a162a899c552777143118f05db009247c6224b06b922b6280de5725726afe21a3283a18ad9c38fc1c65dadb709d440e10cf3fe754d8c
 DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9
+DIST SU2-7.1.0-TestCases.tar.gz 449701778 BLAKE2B 
8a7cb400d330b4bbf62023525e6009a8c05af5a375b7479087b3b579d7f3162a11091f09294381fcd11d7bc358e77f10f69efc0999a304135f8850e3fe005000
 SHA512 
a0e354b073b4cfaeb47a9bd33ac66a636b12a065ca7caff4bd50c54e2b191809fd463f980568e0b7d4d559714d2dca99fe9a3e5854aa345be24010cd1239e772
+DIST SU2-7.1.0-Tutorials.tar.gz 66570840 BLAKE2B 
fdbc23503abd7a250464ca8da52ab87f67069d2a3fca130038c1ea83c3b18aa476fed3a21f725b142a97923b101d7906a720f6dff28341a13915ed6216660d7f
 SHA512 
7843a7ed5b3c606ea9821745390c70bbfd3cb66a17494360b4139e8735a8e83546acd0912462b7fc3b63ff9f2097610294c1c9af25d104962f727f599cdb8ae9
+DIST SU2-7.1.0.tar.gz 20542933 BLAKE2B 
e6e6d82a990bf4043d1c6c58a5fe7a100a923b2c6ae6a29f7bb969e02279eeb5587f7930b2372cf67e26f451c598cf81e2515eeb7e516d6ab060ac7e986a0110
 SHA512 
309b4e06c5fc084ea2a06797ae400392b924c3654d354170c3159327c9e022081745bee28b1537ed3ad4e7c1333afb8c38a1ca033ff28662b8d5f5badfdc8465
+DIST mutationpp-1.0.1.tar.gz 4021945 BLAKE2B 
caae3ca155541a36822a950047efb867aab098bc9db311d675acca272d7f317ff35524086a0ea5eda524bbe125e4874f41dc1dbad92bfee4387e3a0c649bbd0a
 SHA512 
ba8beeb7cdaf1b526571e27f745d8d53c1e20a96bd194a5949acb8b6d5f75553867158a63bfc7198502177a9e8a91bf82a67d450a3ba72b21f8490539f45ef01

diff --git a/sci-physics/SU2/SU2-7.1.0.ebuild b/sci-physics/SU2/SU2-7.1.0.ebuild
new file mode 100644
index ..0357fd63
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.1.0.ebuild
@@ -0,0 +1,119 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8,9} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   mpp? ( https://github.com/mutationpp/Mutationpp/archive/v1.0.1.tar.gz 
-> mutationpp-1.0.1.tar.gz )
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi mpp openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2021-01-05 Thread Andrew Ammerlaan

commit: 9b382fc34a3d2eae3c7cea3b3834c18c457bf81d
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Tue Jan  5 15:21:37 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Tue Jan  5 15:21:37 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=9b382fc3

sci-physics/SU2: drop unreferenced patch

it is now fetched, so no need to have it here anymore

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-physics/SU2/Manifest   |2 +-
 .../SU2/files/SU2-7.0.8-fix-python-optimize.patch  | 2212 
 2 files changed, 1 insertion(+), 2213 deletions(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 10d45c06..7a4bd55d 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,4 +1,4 @@
 DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7bef36a40986f4f715da46d91f851eb59390329433c6941a280eca34ad675633b2f1b01a897d1db8d177a5c4f770b286d0625
 SHA512 
0884b4f750dbcfd3f2cb0e71d6005932e4edd90a50fa84eb484f6c0c523930ddebfb3ed4315161b8fdeff911a52fa72b6d79739c8e19cd634b9823e007520213
 DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
-DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9
 DIST SU2-7.0.8-fix-python-optimize.patch 104379 BLAKE2B 
e2cb9f58af5f600f25d01a082b55a344d3b05c455d44cfcb3370fc77546b6821d616e80f577b7af4b19ad519f086495eb6f6bde1f1712451ac477d6dd538fa0e
 SHA512 
f21ed5fc1e61b78f3858a162a899c552777143118f05db009247c6224b06b922b6280de5725726afe21a3283a18ad9c38fc1c65dadb709d440e10cf3fe754d8c
+DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9

diff --git a/sci-physics/SU2/files/SU2-7.0.8-fix-python-optimize.patch 
b/sci-physics/SU2/files/SU2-7.0.8-fix-python-optimize.patch
deleted file mode 100644
index 64bff0a3..
--- a/sci-physics/SU2/files/SU2-7.0.8-fix-python-optimize.patch
+++ /dev/null
@@ -1,2212 +0,0 @@
-diff -Naur old/SU2_PY/FSI/FSIInterface.py new/SU2_PY/FSI/FSIInterface.py
 old/SU2_PY/FSI/FSIInterface.py 2020-05-01 19:09:18.0 +0300
-+++ new/SU2_PY/FSI/FSIInterface.py 2020-05-10 16:17:07.0 +0300
-@@ -6,8 +6,8 @@
- #  \version 7.0.8 "Blackbird"
- #
- # SU2 Project Website: https://su2code.github.io
--# 
--# The SU2 Project is maintained by the SU2 Foundation 
-+#
-+# The SU2 Project is maintained by the SU2 Foundation
- # (http://su2foundation.org)
- #
- # Copyright 2012-2020, SU2 Contributors (cf. AUTHORS.md)
-@@ -16,7 +16,7 @@
- # modify it under the terms of the GNU Lesser General Public
- # License as published by the Free Software Foundation; either
- # version 2.1 of the License, or (at your option) any later version.
--# 
-+#
- # SU2 is distributed in the hope that it will be useful,
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-@@ -42,19 +42,19 @@
- # --
- 
- class Interface:
--""" 
-+"""
- FSI interface class that handles fluid/solid solvers synchronisation and 
communication
- """
--   
-+
- def __init__(self, FSI_config, FluidSolver, SolidSolver, have_MPI):
--  """ 
--  Class constructor. Declare some variables and do some screen outputs.
--  """
--
-+"""
-+Class constructor. Declare some variables and do some screen outputs.
-+"""
-+
- if have_MPI == True:
-   from mpi4py import MPI
-   self.MPI = MPI
--  self.comm = MPI.COMM_WORLD  #MPI World communicator
-+  self.comm = MPI.COMM_WORLD#MPI World 
communicator
-   self.have_MPI = True
-   myid = self.comm.Get_rank()
- else:
-@@ -62,42 +62,42 @@
-   self.have_MPI = False
-   myid = 0
- 
--  self.rootProcess = 0#the root process is 
chosen to be MPI rank = 0
-+self.rootProcess = 0#the root process is 
chosen to be MPI rank = 0
- 
--  self.nDim = FSI_config['NDIM']  #problem dimension
-+self.nDim = FSI_config['NDIM']

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-01-05 Thread Sergey Torokhov

commit: 52ba7eb4ccd6c6e6d696ed3e039c7c9ca991cab6
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Tue Jan  5 13:59:40 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Tue Jan  5 13:59:40 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=52ba7eb4

sci-pythics/SU2: 7.0.8 fix Manifest file with patch info

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 2fa24c27..10d45c06 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,3 +1,4 @@
 DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7bef36a40986f4f715da46d91f851eb59390329433c6941a280eca34ad675633b2f1b01a897d1db8d177a5c4f770b286d0625
 SHA512 
0884b4f750dbcfd3f2cb0e71d6005932e4edd90a50fa84eb484f6c0c523930ddebfb3ed4315161b8fdeff911a52fa72b6d79739c8e19cd634b9823e007520213
 DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
 DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9
+DIST SU2-7.0.8-fix-python-optimize.patch 104379 BLAKE2B 
e2cb9f58af5f600f25d01a082b55a344d3b05c455d44cfcb3370fc77546b6821d616e80f577b7af4b19ad519f086495eb6f6bde1f1712451ac477d6dd538fa0e
 SHA512 
f21ed5fc1e61b78f3858a162a899c552777143118f05db009247c6224b06b922b6280de5725726afe21a3283a18ad9c38fc1c65dadb709d440e10cf3fe754d8c

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

2021-01-05 Thread Sergey Torokhov

commit: 66db3c61843e58a56d2855f7b9445e3f19620bae
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Tue Jan  5 13:46:02 2021 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Tue Jan  5 13:46:02 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=66db3c61

sci-physics/SU2: 7.0.8-r1, mv fix-python-optimize.patch to external repo

Due to large size of "SU2-7.0.8-fix-python-optimize.patch"
move it to external repository to fetch separately.

This patch is required only to generate ".pyc" files
during execution "python_optimize" command on "src_install()" phase
to fix "TabError: inconsistent use of tabs and spaces in indentation".

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/{SU2-7.0.8.ebuild => SU2-7.0.8-r1.ebuild} | 13 +++--
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/sci-physics/SU2/SU2-7.0.8.ebuild 
b/sci-physics/SU2/SU2-7.0.8-r1.ebuild
similarity index 90%
rename from sci-physics/SU2/SU2-7.0.8.ebuild
rename to sci-physics/SU2/SU2-7.0.8-r1.ebuild
index 30feedd4..f7e5b83f 100644
--- a/sci-physics/SU2/SU2-7.0.8.ebuild
+++ b/sci-physics/SU2/SU2-7.0.8-r1.ebuild
@@ -11,6 +11,7 @@ DESCRIPTION="SU2: An Open-Source Suite for Multiphysics 
Simulation and Design"
 HOMEPAGE="https://su2code.github.io/;
 SRC_URI="
https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   
https://github.com/band-a-prend/gentoo-overlay/raw/master/sci-physics/${PN}/files/${P}-fix-python-optimize.patch
test? ( https://github.com/su2code/TestCases/archive/v7.0.7.tar.gz -> 
${PN}-7.0.7-TestCases.tar.gz )
tutorials? ( https://github.com/su2code/Tutorials/archive/v7.0.7.tar.gz 
-> ${PN}-7.0.7-Tutorials.tar.gz )
 "
@@ -42,12 +43,12 @@ DEPEND="
 BDEPEND="virtual/pkgconfig"
 
 PATCHES=(
-   "${FILESDIR}/${P}-fix-env.patch"
"${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
-   "${FILESDIR}/${P}-fix-python-optimize.patch"
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${DISTDIR}/${P}-fix-python-optimize.patch"
 )
 
-DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+DOCS=( "README.md" "SU2_PY/documentation.txt" )
 
 src_unpack() {
unpack "${P}.tar.gz"
@@ -57,7 +58,7 @@ src_unpack() {
fi
if use tutorials ; then
einfo "Unpacking ${PN}-7.0.7-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
-   mkdir "${P}"/Tutorials
+   mkdir "${P}"/Tutorials || die
tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${PN}-7.0.7-Tutorials.tar.gz" || die
fi
 }
@@ -103,8 +104,8 @@ src_test() {
 
 src_install() {
meson_src_install
-   mkdir -p "${ED}$(python_get_sitedir)"
-   mv "${ED}"/usr/bin/{FSI,SU2,*.py} -t "${ED}$(python_get_sitedir)"
+   mkdir -p "${ED}$(python_get_sitedir)" || die
+   mv "${ED}"/usr/bin/{FSI,SU2,*.py} -t "${ED}$(python_get_sitedir)" || die
python_optimize "${D}/$(python_get_sitedir)"
 
if use tutorials ; then

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2020-12-09 Thread Sergey Torokhov

commit: 3f826bf9b12a22fa0e873b7818193187f999b1b5
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Dec  9 23:34:37 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Dec  9 23:34:37 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=3f826bf9

sci-physics/SU2: 7.0.8 version bump

There are no dedicated Test and Tutorials tarballs this time.
The tarbals from 7.0.7 are used.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest   |1 +
 sci-physics/SU2/SU2-7.0.8.ebuild   |  114 +
 sci-physics/SU2/files/SU2-7.0.8-fix-env.patch  |   12 +
 .../SU2/files/SU2-7.0.8-fix-python-optimize.patch  | 2212 
 4 files changed, 2339 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 876649be..7b30d7cd 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -4,3 +4,4 @@ DIST SU2-7.0.6.tar.gz 20531872 BLAKE2B 
30e59bc6876223d87429b79f101a5705f989096a1
 DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7bef36a40986f4f715da46d91f851eb59390329433c6941a280eca34ad675633b2f1b01a897d1db8d177a5c4f770b286d0625
 SHA512 
0884b4f750dbcfd3f2cb0e71d6005932e4edd90a50fa84eb484f6c0c523930ddebfb3ed4315161b8fdeff911a52fa72b6d79739c8e19cd634b9823e007520213
 DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
 DIST SU2-7.0.7.tar.gz 20618138 BLAKE2B 
c823ea59fd28547b78c4694d45995e83c5f2c16229c40d20b951cdd62a98e13c77c07cffa87a1ec105b29a597878c7a2342c6ac90c7c9751ed20f876194a55e1
 SHA512 
c5dacc8b2f4ab7eb72852d8e6ae59c0800e8126faf20641135fa31ec42915b8e3553082e328b2b158e3e337f7aab0a932b6b1f875d3c0191db538bb923affcf3
+DIST SU2-7.0.8.tar.gz 20554206 BLAKE2B 
ac291eeae696197f5875839defa98bde550c5250b5a5cff8049e0d1c8184c5ec6d225b77618d079a8fb3d5a7f4d0531a0b2931fd15e045299fa55c7dd03d9fd1
 SHA512 
26ed8c39d2dfcdb3fc4e1c986c64f683f44cd4123ce5f7a482c4557a82b04b4bd8ef1f04332ab36ad0f987cfb98053fb8b30ef81faf51c7c56aebc1a30467df9

diff --git a/sci-physics/SU2/SU2-7.0.8.ebuild b/sci-physics/SU2/SU2-7.0.8.ebuild
new file mode 100644
index ..5356a05b
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.0.8.ebuild
@@ -0,0 +1,114 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8,9} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   test? ( https://github.com/su2code/TestCases/archive/v7.0.7.tar.gz -> 
${PN}-7.0.7-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v7.0.7.tar.gz 
-> ${PN}-7.0.7-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+   "${FILESDIR}/${P}-fix-python-optimize.patch"
+)
+
+DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use test ; then
+   einfo "Unpacking ${PN}-7.0.7-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
+   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${PN}-7.0.7-TestCases.tar.gz" || die
+   fi
+   if use tutorials ; then
+   einfo "Unpacking ${PN}-7.0.7-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
+   mkdir "${P}"/Tutorials
+   tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${PN}-7.0.7-Tutorials.tar.gz" || die
+   fi
+}
+
+src_configure() {
+   local emesonargs=(
+   -Denable-autodiff=false
+   -Denable-directdiff=false
+   -Denable-pastix=false
+   -Denable-pywrapper=false
+   -Dwith-omp=false
+   $(meson_feature mpi with-mpi)
+   $(meson_use cgns enable-cgns)
+   $(meson_use mkl enable-mkl)
+   $(meson_use openblas enable-openblas)
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2020-10-21 Thread Sergey Torokhov

commit: 4cd820043758ecf6082d0a3b3ddfa5373fccac13
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Wed Oct 21 21:06:06 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Wed Oct 21 21:23:27 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=4cd82004

sci-physics/SU2: 7.0.7 version bump

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest   |3 +
 sci-physics/SU2/SU2-7.0.7.ebuild   |  114 +
 sci-physics/SU2/files/SU2-7.0.7-fix-env.patch  |   12 +
 .../SU2/files/SU2-7.0.7-fix-python-optimize.patch  | 2212 
 4 files changed, 2341 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index b68e4c98..876649be 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,3 +1,6 @@
 DIST SU2-7.0.6-TestCases.tar.gz 447944839 BLAKE2B 
5212ef7bf69bb40120ca2af99a02f2a89ae6cc0a1e048e57409ee1d2911f930452f4a5ef668126d6b7144c3f81d50bdadd0bcc810f0472740ccbbb6605e5a07d
 SHA512 
c976450e7e17df58b47cbf14d18c4435f977a70dc086d5b74ea584ae14b3204632ef87b2dce6a456396179f1b72ef8eba83065a42d978b8d6966d5446decbd3c
 DIST SU2-7.0.6-Tutorials.tar.gz 64282244 BLAKE2B 
3b0ce136c9fa5c3e0ffc585e28b1a60470eeaf2518cbef539fccc185f79cd41a889e3c3c8a0ada3f488cfe1d2d0115e2768267c6ef4502b882b07f909f6f382c
 SHA512 
4aaf39b98cbbe4c9e12d78027b0ee2b3d30fd614d1e48092d8bfd25c312a06a1621b2192653a7d8ac767762b06ae339ab6fb77e81f833efdb419ce09f92dec2f
 DIST SU2-7.0.6.tar.gz 20531872 BLAKE2B 
30e59bc6876223d87429b79f101a5705f989096a1b81725aa20012567d15b08b6a8a24140cc76b35c6c3657a1d6afa85d56da699ab38dac85714e296d7ad8531
 SHA512 
a4619dd969c6d9cb20de1d373c8e0af9d56654f9f96d919662897db4c3c8bf52b45fb1239065d480ba1b4f05ba7a17c9540ff3fe47fb0d96864736200cda8bcc
+DIST SU2-7.0.7-TestCases.tar.gz 448969006 BLAKE2B 
6c886824b55d7f8516d2ea69e2f7bef36a40986f4f715da46d91f851eb59390329433c6941a280eca34ad675633b2f1b01a897d1db8d177a5c4f770b286d0625
 SHA512 
0884b4f750dbcfd3f2cb0e71d6005932e4edd90a50fa84eb484f6c0c523930ddebfb3ed4315161b8fdeff911a52fa72b6d79739c8e19cd634b9823e007520213
+DIST SU2-7.0.7-Tutorials.tar.gz 64282235 BLAKE2B 
7a6b780ee6f01d26a7a7d4751ca39798af56cfd7b99ca3e13fdff61aecd631a3aa4c98a487f48a8b2593c711ee25bd1ddc90a316bde2c287e95a383321f1d5e9
 SHA512 
189b5da96f08689b62ba3c42ee349edd2e145f371112895587e53497f16de3d6fdbf17308af39961775d76e3169c40872ced8e267146b6da5ae12d31a4c70fa9
+DIST SU2-7.0.7.tar.gz 20618138 BLAKE2B 
c823ea59fd28547b78c4694d45995e83c5f2c16229c40d20b951cdd62a98e13c77c07cffa87a1ec105b29a597878c7a2342c6ac90c7c9751ed20f876194a55e1
 SHA512 
c5dacc8b2f4ab7eb72852d8e6ae59c0800e8126faf20641135fa31ec42915b8e3553082e328b2b158e3e337f7aab0a932b6b1f875d3c0191db538bb923affcf3

diff --git a/sci-physics/SU2/SU2-7.0.7.ebuild b/sci-physics/SU2/SU2-7.0.7.ebuild
new file mode 100644
index ..9e7077f6
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.0.7.ebuild
@@ -0,0 +1,114 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+   "${FILESDIR}/${P}-fix-python-optimize.patch"
+)
+
+DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use test ; then
+   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
+   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${P}-TestCases.tar.gz" || die
+   fi
+   if use tutorials ; then
+   einfo "Unpacking ${P}-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
+   mkdir "${P}"/Tutorials
+   tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${P}-Tutorials.tar.gz" || die
+   fi
+}
+
+src_configure() {
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2020-10-09 Thread Sergey Torokhov

commit: 5ab4e541e928cbd52d090ae680857ff72ee4dd2f
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Sat Oct 10 00:27:53 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Sat Oct 10 00:27:53 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=5ab4e541

sci-physics/SU2: drop old

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest  |   6 --
 sci-physics/SU2/SU2-7.0.4.ebuild  | 112 -
 sci-physics/SU2/SU2-7.0.5.ebuild  | 115 --
 sci-physics/SU2/files/SU2-7.0.4-fix-env.patch |  24 --
 sci-physics/SU2/files/SU2-7.0.5-fix-env.patch |  12 ---
 5 files changed, 269 deletions(-)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index a4481036..b68e4c98 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,9 +1,3 @@
-DIST SU2-7.0.4-TestCases.tar.gz 437960103 BLAKE2B 
2469edc23f62589fa18be5fff6e036965f6b5f6e2be207642d318aac4d2044c07f0891568f86c1a3ab065e79afce50cc73ad0857b82093d79ac28a4d0451a4ad
 SHA512 
f21d963815e024582e99647a21ebae0b17fc69f75bc34bb72cc3a86cc9ff8502342b31755b5da73e7088b4d0ce430bdd6b4efefc03583cbfcf5156c1849328e1
-DIST SU2-7.0.4-Tutorials.tar.gz 64282233 BLAKE2B 
b0d13a0988d5617868fad6098fe8110e3600415f05784ff04416cb23162fadc8c1d06d50c5200b14f65afb3e97ee766b21dfdcd4ec8ded9026baf510ca829e48
 SHA512 
604a05e15a8eae1c7255016261a6576a97fc364f66004ecaccaae932e3a97624c2599d354dd874562824caa8f8ea3dac2f03e0105b1c27d66ec0bf59e3a27105
-DIST SU2-7.0.4.tar.gz 20516147 BLAKE2B 
21f45e4918bbc6a72bf47ad61d3301abed50a7cf569e9e8d4040201ff653e583d50a547853365302671922f023d0cc6f3735c1afcd0f3b6bf3c3fc92dc807787
 SHA512 
8e69f0e1d335adef0bd98666c98e29bc15ee0d7a0fcbbbc91a1ba02275ca52fda7f8f47434547f7982ce0e73a6ff78bd2ed57ca328d1e87b8afdd3b0a698d262
-DIST SU2-7.0.5-TestCases.tar.gz 444209661 BLAKE2B 
a7b14a3ee679a28a3a4530ddca45f39fdc2c0bc5f29fe20e6c9f04d03dee6ca08f98648989b0160ee8742621b539e2f4af9e8bdfb802c3e460a9f3b7e1be3dda
 SHA512 
f21acbaccce66685323566a3f856ceb5fbd36764a8dea875af839520b46be8f7e26491ccb855243f93e4ae948534574080e986faafc2a84c86754fe39f74e240
-DIST SU2-7.0.5-Tutorials.tar.gz 64282246 BLAKE2B 
9c8823df5bbda1be80f03dfa6d9de4b4263904acbee15f6928d3758a9b25c84ace59bf02847798838cbf3236961f51589e851e342f288961b2f2a62e28de216c
 SHA512 
2b7c98cc4d060c850572e45418d4ddf38843ced3349a3fb807c1d32f0e5aabf578f8944918e3fc63a32161385eaf69b4742d24ef41d21b43006d5b881a89953b
-DIST SU2-7.0.5.tar.gz 20526328 BLAKE2B 
0c3b16269f9d8356eaecde991853fe184188b98df62186c56780ee34b26995763adbac0acca53db1625ac9b0dfadc3348eac792e700e66be00a174ff056e017d
 SHA512 
283da35aa4f6bac4d7451506c6b84d98a18dfe7630adfc17764511fba8171b15c36ee80807bbfc1c55e39e196f8ed304fff3eb1182dfac15aa6a86a9613e51ad
 DIST SU2-7.0.6-TestCases.tar.gz 447944839 BLAKE2B 
5212ef7bf69bb40120ca2af99a02f2a89ae6cc0a1e048e57409ee1d2911f930452f4a5ef668126d6b7144c3f81d50bdadd0bcc810f0472740ccbbb6605e5a07d
 SHA512 
c976450e7e17df58b47cbf14d18c4435f977a70dc086d5b74ea584ae14b3204632ef87b2dce6a456396179f1b72ef8eba83065a42d978b8d6966d5446decbd3c
 DIST SU2-7.0.6-Tutorials.tar.gz 64282244 BLAKE2B 
3b0ce136c9fa5c3e0ffc585e28b1a60470eeaf2518cbef539fccc185f79cd41a889e3c3c8a0ada3f488cfe1d2d0115e2768267c6ef4502b882b07f909f6f382c
 SHA512 
4aaf39b98cbbe4c9e12d78027b0ee2b3d30fd614d1e48092d8bfd25c312a06a1621b2192653a7d8ac767762b06ae339ab6fb77e81f833efdb419ce09f92dec2f
 DIST SU2-7.0.6.tar.gz 20531872 BLAKE2B 
30e59bc6876223d87429b79f101a5705f989096a1b81725aa20012567d15b08b6a8a24140cc76b35c6c3657a1d6afa85d56da699ab38dac85714e296d7ad8531
 SHA512 
a4619dd969c6d9cb20de1d373c8e0af9d56654f9f96d919662897db4c3c8bf52b45fb1239065d480ba1b4f05ba7a17c9540ff3fe47fb0d96864736200cda8bcc

diff --git a/sci-physics/SU2/SU2-7.0.4.ebuild b/sci-physics/SU2/SU2-7.0.4.ebuild
deleted file mode 100644
index c76208dc..
--- a/sci-physics/SU2/SU2-7.0.4.ebuild
+++ /dev/null
@@ -1,112 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8} )
-
-inherit meson python-single-r1
-
-DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
-HOMEPAGE="https://su2code.github.io/;
-SRC_URI="
-   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
-   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
-   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
-"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-
-IUSE="cgns -mkl +mpi openblas tecio test tutorials"
-RESTRICT="!test? ( test )"
-REQUIRED_USE="
-   ${PYTHON_REQUIRED_USE}
-   mkl? ( !openblas )
-"
-
-RDEPEND="
-   ${PYTHON_DEPS}
-   mpi? ( virtual/mpi[cxx] )
-   mkl? ( sci-libs/mkl )
-   openblas? ( sci-libs/openblas )
-"
-DEPEND="
-   ${RDEPEND}
-   tecio? ( dev-libs/boost:= )
-"

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

2020-07-13 Thread Sergey Torokhov

commit: cf1b13bcfb31ad502dce94232ef5200c54131194
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Mon Jul 13 18:58:12 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Mon Jul 13 18:58:12 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=cf1b13bc

sci-physics/SU2: 7.0.6 version bump

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest  |   3 +
 sci-physics/SU2/SU2-7.0.6.ebuild  | 115 ++
 sci-physics/SU2/files/SU2-7.0.6-fix-env.patch |  12 +++
 3 files changed, 130 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 87318f5..a448103 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -4,3 +4,6 @@ DIST SU2-7.0.4.tar.gz 20516147 BLAKE2B 
21f45e4918bbc6a72bf47ad61d3301abed50a7cf5
 DIST SU2-7.0.5-TestCases.tar.gz 444209661 BLAKE2B 
a7b14a3ee679a28a3a4530ddca45f39fdc2c0bc5f29fe20e6c9f04d03dee6ca08f98648989b0160ee8742621b539e2f4af9e8bdfb802c3e460a9f3b7e1be3dda
 SHA512 
f21acbaccce66685323566a3f856ceb5fbd36764a8dea875af839520b46be8f7e26491ccb855243f93e4ae948534574080e986faafc2a84c86754fe39f74e240
 DIST SU2-7.0.5-Tutorials.tar.gz 64282246 BLAKE2B 
9c8823df5bbda1be80f03dfa6d9de4b4263904acbee15f6928d3758a9b25c84ace59bf02847798838cbf3236961f51589e851e342f288961b2f2a62e28de216c
 SHA512 
2b7c98cc4d060c850572e45418d4ddf38843ced3349a3fb807c1d32f0e5aabf578f8944918e3fc63a32161385eaf69b4742d24ef41d21b43006d5b881a89953b
 DIST SU2-7.0.5.tar.gz 20526328 BLAKE2B 
0c3b16269f9d8356eaecde991853fe184188b98df62186c56780ee34b26995763adbac0acca53db1625ac9b0dfadc3348eac792e700e66be00a174ff056e017d
 SHA512 
283da35aa4f6bac4d7451506c6b84d98a18dfe7630adfc17764511fba8171b15c36ee80807bbfc1c55e39e196f8ed304fff3eb1182dfac15aa6a86a9613e51ad
+DIST SU2-7.0.6-TestCases.tar.gz 447944839 BLAKE2B 
5212ef7bf69bb40120ca2af99a02f2a89ae6cc0a1e048e57409ee1d2911f930452f4a5ef668126d6b7144c3f81d50bdadd0bcc810f0472740ccbbb6605e5a07d
 SHA512 
c976450e7e17df58b47cbf14d18c4435f977a70dc086d5b74ea584ae14b3204632ef87b2dce6a456396179f1b72ef8eba83065a42d978b8d6966d5446decbd3c
+DIST SU2-7.0.6-Tutorials.tar.gz 64282244 BLAKE2B 
3b0ce136c9fa5c3e0ffc585e28b1a60470eeaf2518cbef539fccc185f79cd41a889e3c3c8a0ada3f488cfe1d2d0115e2768267c6ef4502b882b07f909f6f382c
 SHA512 
4aaf39b98cbbe4c9e12d78027b0ee2b3d30fd614d1e48092d8bfd25c312a06a1621b2192653a7d8ac767762b06ae339ab6fb77e81f833efdb419ce09f92dec2f
+DIST SU2-7.0.6.tar.gz 20531872 BLAKE2B 
30e59bc6876223d87429b79f101a5705f989096a1b81725aa20012567d15b08b6a8a24140cc76b35c6c3657a1d6afa85d56da699ab38dac85714e296d7ad8531
 SHA512 
a4619dd969c6d9cb20de1d373c8e0af9d56654f9f96d919662897db4c3c8bf52b45fb1239065d480ba1b4f05ba7a17c9540ff3fe47fb0d96864736200cda8bcc

diff --git a/sci-physics/SU2/SU2-7.0.6.ebuild b/sci-physics/SU2/SU2-7.0.6.ebuild
new file mode 100644
index 000..d8a4c42
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.0.6.ebuild
@@ -0,0 +1,115 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+   "${FILESDIR}/${PN}-7.0.4-fix-python-optimize.patch"
+)
+
+DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use test ; then
+   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
+   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${P}-TestCases.tar.gz" || die
+   fi
+   if use tutorials ; then
+   einfo "Unpacking ${P}-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
+   mkdir "${P}"/Tutorials
+   tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${P}-Tutorials.tar.gz" || die
+   fi
+}
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2020-06-16 Thread Sergey Torokhov

commit: d98f35a18e0df831b2c2ef37bac5152591800710
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Tue Jun 16 14:32:41 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Tue Jun 16 14:32:41 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=d98f35a1

sci-physics/SU2: 7.0.5 version bump

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest  |   3 +
 sci-physics/SU2/SU2-7.0.5.ebuild  | 115 ++
 sci-physics/SU2/files/SU2-7.0.5-fix-env.patch |  12 +++
 3 files changed, 130 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
index 6ebe00f..87318f5 100644
--- a/sci-physics/SU2/Manifest
+++ b/sci-physics/SU2/Manifest
@@ -1,3 +1,6 @@
 DIST SU2-7.0.4-TestCases.tar.gz 437960103 BLAKE2B 
2469edc23f62589fa18be5fff6e036965f6b5f6e2be207642d318aac4d2044c07f0891568f86c1a3ab065e79afce50cc73ad0857b82093d79ac28a4d0451a4ad
 SHA512 
f21d963815e024582e99647a21ebae0b17fc69f75bc34bb72cc3a86cc9ff8502342b31755b5da73e7088b4d0ce430bdd6b4efefc03583cbfcf5156c1849328e1
 DIST SU2-7.0.4-Tutorials.tar.gz 64282233 BLAKE2B 
b0d13a0988d5617868fad6098fe8110e3600415f05784ff04416cb23162fadc8c1d06d50c5200b14f65afb3e97ee766b21dfdcd4ec8ded9026baf510ca829e48
 SHA512 
604a05e15a8eae1c7255016261a6576a97fc364f66004ecaccaae932e3a97624c2599d354dd874562824caa8f8ea3dac2f03e0105b1c27d66ec0bf59e3a27105
 DIST SU2-7.0.4.tar.gz 20516147 BLAKE2B 
21f45e4918bbc6a72bf47ad61d3301abed50a7cf569e9e8d4040201ff653e583d50a547853365302671922f023d0cc6f3735c1afcd0f3b6bf3c3fc92dc807787
 SHA512 
8e69f0e1d335adef0bd98666c98e29bc15ee0d7a0fcbbbc91a1ba02275ca52fda7f8f47434547f7982ce0e73a6ff78bd2ed57ca328d1e87b8afdd3b0a698d262
+DIST SU2-7.0.5-TestCases.tar.gz 444209661 BLAKE2B 
a7b14a3ee679a28a3a4530ddca45f39fdc2c0bc5f29fe20e6c9f04d03dee6ca08f98648989b0160ee8742621b539e2f4af9e8bdfb802c3e460a9f3b7e1be3dda
 SHA512 
f21acbaccce66685323566a3f856ceb5fbd36764a8dea875af839520b46be8f7e26491ccb855243f93e4ae948534574080e986faafc2a84c86754fe39f74e240
+DIST SU2-7.0.5-Tutorials.tar.gz 64282246 BLAKE2B 
9c8823df5bbda1be80f03dfa6d9de4b4263904acbee15f6928d3758a9b25c84ace59bf02847798838cbf3236961f51589e851e342f288961b2f2a62e28de216c
 SHA512 
2b7c98cc4d060c850572e45418d4ddf38843ced3349a3fb807c1d32f0e5aabf578f8944918e3fc63a32161385eaf69b4742d24ef41d21b43006d5b881a89953b
+DIST SU2-7.0.5.tar.gz 20526328 BLAKE2B 
0c3b16269f9d8356eaecde991853fe184188b98df62186c56780ee34b26995763adbac0acca53db1625ac9b0dfadc3348eac792e700e66be00a174ff056e017d
 SHA512 
283da35aa4f6bac4d7451506c6b84d98a18dfe7630adfc17764511fba8171b15c36ee80807bbfc1c55e39e196f8ed304fff3eb1182dfac15aa6a86a9613e51ad

diff --git a/sci-physics/SU2/SU2-7.0.5.ebuild b/sci-physics/SU2/SU2-7.0.5.ebuild
new file mode 100644
index 000..d8a4c42
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.0.5.ebuild
@@ -0,0 +1,115 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+# cgns, metis, parmetis are bundled;
+# omp is disable as it's experimental;
+# pastix is disabled as it's try to find bundled libs;
+IUSE="cgns -mkl +mpi openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
+   "${FILESDIR}/${PN}-7.0.4-fix-python-optimize.patch"
+)
+
+DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use test ; then
+   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
+   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${P}-TestCases.tar.gz" || die
+   fi
+   if use tutorials ; then
+   einfo "Unpacking ${P}-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
+   mkdir "${P}"/Tutorials
+   tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${P}-Tutorials.tar.gz" || die
+   fi
+}
+
+src_configure() {
+   local emesonargs=(
+   -Denable-autodiff=false
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

2020-05-11 Thread Sergey Torokhov

commit: 021c7068ab1f61ef171029cbb243d13f1b33237e
Author: Sergey Torokhov  yandex  ru>
AuthorDate: Mon May 11 22:56:45 2020 +
Commit: Sergey Torokhov  yandex  ru>
CommitDate: Mon May 11 22:56:45 2020 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=021c7068

sci-physics/SU2: new package

The SU2 package contains several bunbled libraries that currently
aren't unbundled in ebuild.

CGNS:
Tried to unbundled CNGS but it failed to compiled against system
gcnslib-3.3.0; successfully compiled against cgnslib-3.4.0
but related tests are failed.

Metis, Parmetis:
This packages couldn't be installed simultaneously in Gentoo
and required by build system if compiled via meson build system
with mpi option being enabled. They could be optionaly chosen
if autotools build system is used (ebuild uses meson).

Some addidional features disabled due to their experimantal status
or due to requirement to download additional third-party libraries.
At this moment ebuild doesn't provide such features to be built.
They are also will be bundled if implemented and compiled statically.

Signed-off-by: Sergey Torokhov  yandex.ru>

 sci-physics/SU2/Manifest   |3 +
 sci-physics/SU2/SU2-7.0.4.ebuild   |  112 +
 sci-physics/SU2/files/SU2-7.0.4-fix-env.patch  |   24 +
 .../SU2/files/SU2-7.0.4-fix-python-optimize.patch  | 2302 
 .../SU2/files/SU2-7.0.4-unbundle_boost.patch   |   31 +
 sci-physics/SU2/metadata.xml   |   28 +
 6 files changed, 2500 insertions(+)

diff --git a/sci-physics/SU2/Manifest b/sci-physics/SU2/Manifest
new file mode 100644
index 000..6ebe00f
--- /dev/null
+++ b/sci-physics/SU2/Manifest
@@ -0,0 +1,3 @@
+DIST SU2-7.0.4-TestCases.tar.gz 437960103 BLAKE2B 
2469edc23f62589fa18be5fff6e036965f6b5f6e2be207642d318aac4d2044c07f0891568f86c1a3ab065e79afce50cc73ad0857b82093d79ac28a4d0451a4ad
 SHA512 
f21d963815e024582e99647a21ebae0b17fc69f75bc34bb72cc3a86cc9ff8502342b31755b5da73e7088b4d0ce430bdd6b4efefc03583cbfcf5156c1849328e1
+DIST SU2-7.0.4-Tutorials.tar.gz 64282233 BLAKE2B 
b0d13a0988d5617868fad6098fe8110e3600415f05784ff04416cb23162fadc8c1d06d50c5200b14f65afb3e97ee766b21dfdcd4ec8ded9026baf510ca829e48
 SHA512 
604a05e15a8eae1c7255016261a6576a97fc364f66004ecaccaae932e3a97624c2599d354dd874562824caa8f8ea3dac2f03e0105b1c27d66ec0bf59e3a27105
+DIST SU2-7.0.4.tar.gz 20516147 BLAKE2B 
21f45e4918bbc6a72bf47ad61d3301abed50a7cf569e9e8d4040201ff653e583d50a547853365302671922f023d0cc6f3735c1afcd0f3b6bf3c3fc92dc807787
 SHA512 
8e69f0e1d335adef0bd98666c98e29bc15ee0d7a0fcbbbc91a1ba02275ca52fda7f8f47434547f7982ce0e73a6ff78bd2ed57ca328d1e87b8afdd3b0a698d262

diff --git a/sci-physics/SU2/SU2-7.0.4.ebuild b/sci-physics/SU2/SU2-7.0.4.ebuild
new file mode 100644
index 000..1884b11
--- /dev/null
+++ b/sci-physics/SU2/SU2-7.0.4.ebuild
@@ -0,0 +1,112 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7,8} )
+
+inherit meson python-single-r1
+
+DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+HOMEPAGE="https://su2code.github.io/;
+SRC_URI="
+   https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
+   test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> 
${P}-TestCases.tar.gz )
+   tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz 
-> ${P}-Tutorials.tar.gz )
+"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+IUSE="cgns -mkl +mpi openblas tecio test tutorials"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+   ${PYTHON_REQUIRED_USE}
+   mkl? ( !openblas )
+"
+
+RDEPEND="
+   ${PYTHON_DEPS}
+   mpi? ( virtual/mpi[cxx] )
+   mkl? ( sci-libs/mkl )
+   openblas? ( sci-libs/openblas )
+"
+DEPEND="
+   ${RDEPEND}
+   tecio? ( dev-libs/boost:= )
+"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+   "${FILESDIR}/${P}-fix-env.patch"
+   "${FILESDIR}/${P}-unbundle_boost.patch"
+   "${FILESDIR}/${P}-fix-python-optimize.patch"
+)
+
+DOCS=( "LICENSE.md" "README.md" "SU2_PY/documentation.txt" )
+
+src_unpack() {
+   unpack "${P}.tar.gz"
+   if use test ; then
+   einfo "Unpacking ${P}-TestCases.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
+   tar -C "${P}"/TestCases --strip-components=1 -xzf 
"${DISTDIR}/${P}-TestCases.tar.gz" || die
+   fi
+   if use tutorials ; then
+   einfo "Unpacking ${P}-Tutorials.tar.gz to 
/var/tmp/portage/sci-physics/${P}/work/${P}"
+   mkdir "${P}"/Tutorials
+   tar -C "${P}"/Tutorials --strip-components=1 -xzf 
"${DISTDIR}/${P}-Tutorials.tar.gz" || die
+   fi
+}
+
+src_configure() {
+   local emesonargs=(
+   -Denable-autodiff=false
+   -Denable-directdiff=false
+   -Denable-pastix=false
+   -Denable-pywrapper=false
+

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/files/, sci-physics/SU2/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

[gentoo-commits] repo/proj/guru:dev commit in: sci-physics/SU2/, sci-physics/SU2/files/

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