[gentoo-commits] repo/proj/guru:dev commit in: sys-cluster/clusteringsuite/files/, sys-cluster/clusteringsuite/
commit: bf5441f65964490eb32ea360af29fdcba3e15e0d
Author: Alessandro Barbieri gmail com>
AuthorDate: Sun Jul 11 04:13:53 2021 +
Commit: Alessandro Barbieri gmail com>
CommitDate: Sun Jul 11 04:13:53 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=bf5441f6
sys-cluster/clusteringsuite: update EAPI 7 -> 8
Signed-off-by: Alessandro Barbieri gmail.com>
.../clusteringsuite-2.6.9-r1.ebuild| 109
.../clusteringsuite-2.6.9-unbundle-libANN.patch| 193 +
2 files changed, 302 insertions(+)
diff --git a/sys-cluster/clusteringsuite/clusteringsuite-2.6.9-r1.ebuild
b/sys-cluster/clusteringsuite/clusteringsuite-2.6.9-r1.ebuild
new file mode 100644
index 0..cf6723918
--- /dev/null
+++ b/sys-cluster/clusteringsuite/clusteringsuite-2.6.9-r1.ebuild
@@ -0,0 +1,109 @@
+# Copyright 2019-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( pypy3 python3_{8..10} )
+
+inherit python-any-r1
+
+DESCRIPTION="Expose the main performance trends in applications computation
structure"
+HOMEPAGE="
+ https://tools.bsc.es/cluster-analysis
+ https://github.com/bsc-performance-tools/clustering-suite
+"
+SRC_URI="https://ftp.tools.bsc.es/clusteringsuite/clusteringsuite-${PV}-src.tar.bz2;
+
+LICENSE="LGPL-2.1+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="doc mpi"
+#TODO: muster treedbscan
+
+PATCHES=( "${FILESDIR}/${P}-unbundle-libANN.patch" )
+
+RDEPEND="
+ dev-libs/boost:=
+ sci-libs/ann
+ sys-cluster/libbsctools
+ mpi? ( virtual/mpi )
+"
+# treedbscan? (
+# dev-libs/boost[threads]:=
+# dev-libs/gmp
+# dev-libs/mpfr
+# sci-mathematics/cgal
+# sys-cluster/synapse
+#)
+
+DEPEND="
+ ${RDEPEND}
+ ${PYTHON_DEPS}
+"
+BDEPEND="doc? ( app-doc/doxygen )"
+
+src_prepare() {
+ rm -r src/libANN || die
+# rm -r pcfparser_svn3942 || die
+ default
+}
+
+src_configure() {
+
+ local myconf=(
+ --disable-old-pcfparser
+ --disable-static
+ --disable-static-boost
+ --enable-shared
+ --with-boost="${EPREFIX}/usr"
+ --with-pic
+ )
+
+ if use mpi; then
+ myconf+=( "--with-mpi=${EPREFIX}/usr" )
+ else
+ myconf+=( "--without-mpi" )
+ fi
+# if use muster; then
+# myconf+=( "--with-muster=${EPREFIX}/usr" )
+# else
+ myconf+=( "--without-muster" )
+# fi
+# if use treedbscan; then
+# myconf+=( "--enable-treedbscan" )
+# myconf+=( "--with-cgal=${EPREFIX}/usr" )
+# myconf+=( "--with-gmp=${EPREFIX}/usr" )
+# myconf+=( "--with-mpfr=${EPREFIX}/usr" )
+# myconf+=( "--with-synapse=${EPREFIX}/usr" )
+# else
+ myconf+=( "--without-cgal" )
+ myconf+=( "--without-gmp" )
+ myconf+=( "--without-mpfr" )
+ myconf+=( "--without-synapse" )
+# fi
+
+ econf "${myconf[@]}" || die
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ if use doc ; then
+ pushd doc || die
+ emake build-documentation
+ popd
+ fi
+ default
+}
+
+src_install() {
+ MAKEOPTS="-j1" DESTDIR="${D}" emake install
+
+ cd doc || die
+ dodoc -r *.pdf
+
+ rm "${ED}/usr/share/doc/clusteringsuite_manual.pdf" || die
+ mv "${ED}/usr/share/example" "${ED}/usr/share/doc/${PF}/examples" || die
+ docompress -x "/usr/share/doc/${PF}/examples"
+
+ find "${ED}" -name '*.la' -delete || die
+}
diff --git
a/sys-cluster/clusteringsuite/files/clusteringsuite-2.6.9-unbundle-libANN.patch
b/sys-cluster/clusteringsuite/files/clusteringsuite-2.6.9-unbundle-libANN.patch
new file mode 100644
index 0..fd6e15517
--- /dev/null
+++
b/sys-cluster/clusteringsuite/files/clusteringsuite-2.6.9-unbundle-libANN.patch
@@ -0,0 +1,193 @@
+--- a/configure
b/configure
+@@ -19970,7 +19970,7 @@
+
+
+
+-ac_config_files="$ac_config_files Makefile include/Makefile
common_utilities/Makefile pcfparser_svn3942/Makefile src/Makefile
src/BasicClasses/Makefile src/libParaverTraceParser/Makefile
src/libSharedComponents/Makefile src/libSharedComponents/kalign2/Makefile
src/libANN/Makefile src/libClustering/gmeans/Makefile
src/libClustering/Makefile src/libTraceClustering/Makefile
src/DBSCANParametersApproximation/Makefile src/BurstClustering/Makefile
src/ClusteringDataExtractor/Makefile src/ClustersDiff/Makefile
src/ClustersSequenceScore/Makefile scripts/Makefile
src/MusterDistributedClustering/Makefile src/libDistributedClustering/Makefile
src/TreeDBSCAN/Makefile src/TreeDBSCAN/scripts/Makefile doc/Makefile"
++ac_config_files="$ac_config_files Makefile include/Makefile
common_utilities/Makefile
[gentoo-commits] repo/proj/guru:dev commit in: sys-cluster/clusteringsuite/files/, sys-cluster/clusteringsuite/
commit: 0534a9029203626c10275cf85db98df67a036c2b
Author: Alessandro Barbieri gmail com>
AuthorDate: Mon Apr 26 07:14:55 2021 +
Commit: Alessandro Barbieri gmail com>
CommitDate: Mon Apr 26 07:14:55 2021 +
URL:https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=0534a902
sys-cluster/clusteringsuite: new package
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: Alessandro Barbieri gmail.com>
sys-cluster/clusteringsuite/Manifest | 1 +
.../clusteringsuite/clusteringsuite-2.6.9.ebuild | 103
.../clusteringsuite/files/respect-flags.patch | 134 +
sys-cluster/clusteringsuite/metadata.xml | 19 +++
4 files changed, 257 insertions(+)
diff --git a/sys-cluster/clusteringsuite/Manifest
b/sys-cluster/clusteringsuite/Manifest
new file mode 100644
index 0..fa6804d47
--- /dev/null
+++ b/sys-cluster/clusteringsuite/Manifest
@@ -0,0 +1 @@
+DIST clusteringsuite-2.6.9-src.tar.bz2 8081023 BLAKE2B
d53e08a51e0a5a2d487bc4413c19d802804b7ae79b5f1e7c466ba2c37e36d90864a4629f51a98ca5caa83f4cc0a3ca8c74f5652c044c08591c65f3b50acf13d2
SHA512
80903e3d2c018e8ed23874715f7ffc1706ac5d9dcd0826c75bb07c973c28fa9755d4c130021abd6e969e983fbe23463be7361bb29b6d1ab04596ba4f987b1b6a
diff --git a/sys-cluster/clusteringsuite/clusteringsuite-2.6.9.ebuild
b/sys-cluster/clusteringsuite/clusteringsuite-2.6.9.ebuild
new file mode 100644
index 0..bb11cf591
--- /dev/null
+++ b/sys-cluster/clusteringsuite/clusteringsuite-2.6.9.ebuild
@@ -0,0 +1,103 @@
+# Copyright 2019-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( pypy3 python3_{7,8,9} )
+inherit python-any-r1
+
+DESCRIPTION="Automatically expose the main performance trends in applications'
computation structure"
+HOMEPAGE="
+ https://tools.bsc.es/cluster-analysis
+ https://github.com/bsc-performance-tools/clustering-suite
+"
+SRC_URI="https://ftp.tools.bsc.es/clusteringsuite/clusteringsuite-${PV}-src.tar.bz2;
+
+LICENSE="LGPL-2.1+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="doc mpi old-pcfparser"
+#TODO: muster treedbscan
+#TODO: unbundle ANN
+
+#PATCHES=( "${FILESDIR}/respect-flags.patch" )
+
+RDEPEND="
+ dev-libs/boost:=
+ sci-libs/ann
+ mpi? ( virtual/mpi )
+"
+# treedbscan? (
+# dev-libs/boost[threads]:=
+# dev-libs/gmp
+# dev-libs/mpfr
+# sci-mathematics/cgal
+# sys-cluster/synapse
+#)
+
+DEPEND="
+ ${RDEPEND}
+ ${PYTHON_DEPS}
+"
+BDEPEND="doc? ( app-doc/doxygen )"
+
+src_configure() {
+
+ local myconf=(
+ --disable-static
+ --disable-static-boost
+ --enable-shared
+ --with-boost="${EPREFIX}/usr"
+ --with-pic
+
+ $(use_enable old-pcfparser)
+ )
+
+ if use mpi; then
+ myconf+=( "--with-mpi=${EPREFIX}/usr" )
+ else
+ myconf+=( "--without-mpi" )
+ fi
+# if use muster; then
+# myconf+=( "--with-muster=${EPREFIX}/usr" )
+# else
+ myconf+=( "--without-muster" )
+# fi
+# if use treedbscan; then
+# myconf+=( "--enable-treedbscan" )
+# myconf+=( "--with-cgal=${EPREFIX}/usr" )
+# myconf+=( "--with-gmp=${EPREFIX}/usr" )
+# myconf+=( "--with-mpfr=${EPREFIX}/usr" )
+# myconf+=( "--with-synapse=${EPREFIX}/usr" )
+# else
+ myconf+=( "--without-cgal" )
+ myconf+=( "--without-gmp" )
+ myconf+=( "--without-mpfr" )
+ myconf+=( "--without-synapse" )
+# fi
+
+ econf "${myconf[@]}" || die
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ if use doc ; then
+ pushd doc || die
+ emake build-documentation
+ popd
+ fi
+ default
+}
+
+src_install() {
+ MAKEOPTS="-j1" DESTDIR="${D}" emake install
+
+ cd doc || die
+ dodoc -r *.pdf
+
+ rm "${ED}/usr/share/doc/clusteringsuite_manual.pdf" || die
+ mv "${ED}/usr/share/example" "${ED}/usr/share/doc/${PF}/examples" || die
+ docompress -x "/usr/share/doc/${PF}/examples"
+
+ find "${ED}" -name '*.la' -delete || die
+}
diff --git a/sys-cluster/clusteringsuite/files/respect-flags.patch
b/sys-cluster/clusteringsuite/files/respect-flags.patch
new file mode 100644
index 0..9ff5bd384
--- /dev/null
+++ b/sys-cluster/clusteringsuite/files/respect-flags.patch
@@ -0,0 +1,134 @@
+diff '--color=auto' -ru a/config/determine-cc.sh b/config/determine-cc.sh
+--- a/config/determine-cc.sh 2021-04-25 01:09:35.175990108 +0200
b/config/determine-cc.sh 2021-04-25 01:10:02.876433713 +0200
+@@ -1,7 +1,6 @@
+ #!/bin/sh
+ # determine what compiler is behind "cc" (and presumably "CC" and "ftn")
wrapper
+
+-CC=`which cc 2>/dev/null`
+ COMP=
+ if [
