[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 98dc962c5d766be2267f7b090182da28a094c214 Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 13:49:45 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 13:49:45 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=98dc962c sci-biology/dipy: dropped stale live ebuild Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-.ebuild | 37 - 1 file changed, 37 deletions(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild deleted file mode 100644 index a1b162df6..0 --- a/sci-biology/dipy/dipy-.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) - -inherit distutils-r1 git-r3 - -DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="https://github.com/nipy/dipy"; -SRC_URI="" -EGIT_REPO_URI="https://github.com/nipy/dipy"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="" -IUSE="test" -RESTRICT="!test? ( test )" - -RDEPEND=" - sci-libs/nibabel[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] -" -DEPEND=" - dev-python/cython[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/nose[${PYTHON_USEDEP}] ) -" - -python_test() { - distutils_install_for_testing - cd "${TEST_DIR}"/lib || die - nosetests || die -}
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 89aa1ba1779268cfe6ab19a7b02cbeb35c205e31 Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 13:48:35 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 13:48:35 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=89aa1ba1 sci-biology/dipy: EAPI and PYTHON_COMPAT bump Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-1.1.1.ebuild | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/dipy/dipy-1.1.1.ebuild b/sci-biology/dipy/dipy-1.1.1.ebuild index c2c9f724e..15b986afe 100644 --- a/sci-biology/dipy/dipy-1.1.1.ebuild +++ b/sci-biology/dipy/dipy-1.1.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 42877f05eabdcdd1d2238eebc57202842f1779bc Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue Jun 1 08:41:40 2021 + Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue Jun 1 08:41:40 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=42877f05 sci-biology/dipy: bump PYTHON_COMPAT in to match latest release Bug: https://bugs.gentoo.org/793617 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-biology/dipy/dipy-.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 2b087184f..a1b162df6 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_7 ) +PYTHON_COMPAT=( python3_{7..9} ) inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: a2532e610ea1f65f64d4774becc6453167e44950 Author: Andrew Ammerlaan riseup net> AuthorDate: Thu Feb 25 14:38:04 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Thu Feb 25 14:38:04 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a2532e61 sci-biology/dipy: update homepage: 404 Package-Manager: Portage-3.0.15, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/dipy/dipy-1.1.1.ebuild | 2 +- sci-biology/dipy/dipy-.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-biology/dipy/dipy-1.1.1.ebuild b/sci-biology/dipy/dipy-1.1.1.ebuild index 46aaf61f4..c2c9f724e 100644 --- a/sci-biology/dipy/dipy-1.1.1.ebuild +++ b/sci-biology/dipy/dipy-1.1.1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{7..9} ) inherit distutils-r1 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="https://nipy.org/dipy"; +HOMEPAGE="https://github.com/nipy/dipy"; SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index b0a294f64..2b087184f 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 git-r3 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="https://nipy.org/dipy"; +HOMEPAGE="https://github.com/nipy/dipy"; SRC_URI="" EGIT_REPO_URI="https://github.com/nipy/dipy";
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 2ed0af55538aa194cd07ee71819558afad19b243 Author: Sam James gentoo org> AuthorDate: Fri Feb 12 21:46:28 2021 + Commit: Sam James gentoo org> CommitDate: Fri Feb 12 21:46:28 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2ed0af55 sci-biology/dipy: fix syntax Fixes: c9419e0ec2cbc178aa1df6cfe599808fec40d1c8 Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James gentoo.org> sci-biology/dipy/dipy-.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 634c3ef18..b0a294f64 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{7} ) +PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 26ec10516e9d20352d971cfe03b78367af1e9366 Author: Andrew Ammerlaan riseup net> AuthorDate: Wed Jan 13 20:49:17 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Wed Jan 13 20:49:17 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=26ec1051 sci-biology/dipy: use https for homepage Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/dipy/dipy-1.1.1.ebuild | 4 ++-- sci-biology/dipy/dipy-.ebuild | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-biology/dipy/dipy-1.1.1.ebuild b/sci-biology/dipy/dipy-1.1.1.ebuild index 38c9038f9..5a9a1a864 100644 --- a/sci-biology/dipy/dipy-1.1.1.ebuild +++ b/sci-biology/dipy/dipy-1.1.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="http://nipy.org/dipy"; +HOMEPAGE="https://nipy.org/dipy"; SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index f63378c9a..7b04bb9ae 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1 git-r3 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="http://nipy.org/dipy"; +HOMEPAGE="https://nipy.org/dipy"; SRC_URI="" EGIT_REPO_URI="https://github.com/nipy/dipy";
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: cf9934080e325cb40ee2dc7ff791ec8bbd43bd9f Author: Horea Christian chymera eu> AuthorDate: Thu Dec 24 14:09:02 2020 + Commit: Horea Christian gmail com> CommitDate: Thu Dec 24 14:09:02 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf993408 sci-biology/dipy: updated PYTHON_COMPAT Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-1.1.1.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/dipy/dipy-1.1.1.ebuild b/sci-biology/dipy/dipy-1.1.1.ebuild index 028304ce2..38c9038f9 100644 --- a/sci-biology/dipy/dipy-1.1.1.ebuild +++ b/sci-biology/dipy/dipy-1.1.1.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 9e647029cfb847f20541cbf1bdf382f3fc8effda Author: Horea Christian chymera eu> AuthorDate: Thu Dec 24 14:10:02 2020 + Commit: Horea Christian gmail com> CommitDate: Thu Dec 24 14:10:02 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e647029 sci-biology/dipy: conditional test restriction Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-.ebuild | 1 + 1 file changed, 1 insertion(+) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 7eed19d09..f63378c9a 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -16,6 +16,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="" IUSE="test" +RESTRICT="!test? ( test )" RDEPEND=" sci-libs/nibabel[${PYTHON_USEDEP}]
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/, dev-python/num2words/, sci-libs/nibabel/, sci-biology/nitime/, ...
commit: 6922e6ca034d8d4cd13f5101825de6ec930fb276 Author: Horea Christian chymera eu> AuthorDate: Tue Oct 20 16:23:22 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Oct 20 16:23:22 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6922e6ca Updated developer email address. Signed-off-by: Horea Christian chymera.eu> dev-cpp/castxml/metadata.xml | 2 +- dev-python/delegator/metadata.xml | 2 +- dev-python/fslpy/metadata.xml | 2 +- dev-python/grabbit/metadata.xml | 2 +- dev-python/json_tricks/metadata.xml | 2 +- dev-python/num2words/metadata.xml | 2 +- dev-python/pynrrd/metadata.xml| 2 +- dev-python/pyvote/metadata.xml| 2 +- dev-python/traits/metadata.xml| 2 +- dev-python/trimesh/metadata.xml | 2 +- sci-biology/afni/metadata.xml | 2 +- sci-biology/behaviopy/metadata.xml| 2 +- sci-biology/dipy/metadata.xml | 2 +- sci-biology/fsl/files/fsl-5.0.9-headers.patch | 2 +- sci-biology/irsabi_bidsdata/metadata.xml | 2 +- sci-biology/mouse-brain-atlases/metadata.xml | 2 +- sci-biology/nilearn/metadata.xml | 2 +- sci-biology/nitime/metadata.xml | 2 +- sci-biology/samri/metadata.xml| 2 +- sci-biology/samri_bidsdata/metadata.xml | 2 +- sci-biology/samri_bindata/metadata.xml| 2 +- sci-libs/bids-validator/metadata.xml | 2 +- sci-libs/labbookdb/metadata.xml | 2 +- sci-libs/nibabel/metadata.xml | 2 +- sci-libs/nipy/metadata.xml| 2 +- sci-libs/nipype/metadata.xml | 2 +- sci-libs/pybids/metadata.xml | 2 +- sci-libs/spams-python/metadata.xml| 2 +- sci-visualization/surf-ice/metadata.xml | 2 +- 29 files changed, 29 insertions(+), 29 deletions(-) diff --git a/dev-cpp/castxml/metadata.xml b/dev-cpp/castxml/metadata.xml index 8e1a56707..6518e493c 100644 --- a/dev-cpp/castxml/metadata.xml +++ b/dev-cpp/castxml/metadata.xml @@ -5,7 +5,7 @@ gw.foss...@gmail.com - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/delegator/metadata.xml b/dev-python/delegator/metadata.xml index c98623ef2..f816133ea 100644 --- a/dev-python/delegator/metadata.xml +++ b/dev-python/delegator/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/fslpy/metadata.xml b/dev-python/fslpy/metadata.xml index ebf08fddf..caed78b7e 100644 --- a/dev-python/fslpy/metadata.xml +++ b/dev-python/fslpy/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/grabbit/metadata.xml b/dev-python/grabbit/metadata.xml index f297bae41..9f80d6dd0 100644 --- a/dev-python/grabbit/metadata.xml +++ b/dev-python/grabbit/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/json_tricks/metadata.xml b/dev-python/json_tricks/metadata.xml index f833d4463..450d4fcb7 100644 --- a/dev-python/json_tricks/metadata.xml +++ b/dev-python/json_tricks/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/num2words/metadata.xml b/dev-python/num2words/metadata.xml index c98623ef2..f816133ea 100644 --- a/dev-python/num2words/metadata.xml +++ b/dev-python/num2words/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/pynrrd/metadata.xml b/dev-python/pynrrd/metadata.xml index 5375bfa89..bfc8e0028 100644 --- a/dev-python/pynrrd/metadata.xml +++ b/dev-python/pynrrd/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu Horea Christian diff --git a/dev-python/pyvote/metadata.xml b/dev-python/pyvote/metadata.xml index 7e567469c..0ddb4518f 100644 --- a/dev-python/pyvote/metadata.xml +++ b/dev-python/pyvote/metadata.xml @@ -2,7 +2,7 @@ http://www.gentoo.org/dtd/metadata.dtd";> - horea.chr...@gmail.com + c...@chymera.eu
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 725c371d30da257b3ec091b6367f94d9f8d1ef92 Author: Horea Christian chymera eu> AuthorDate: Sat Sep 26 09:49:34 2020 + Commit: Horea Christian gmail com> CommitDate: Sat Sep 26 09:49:34 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=725c371d sci-biology/dipy: metadata formatting Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/metadata.xml | 10 +- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml index e198cb853..5df974033 100644 --- a/sci-biology/dipy/metadata.xml +++ b/sci-biology/dipy/metadata.xml @@ -10,11 +10,11 @@ Gentoo Science Project -Dipy is a free and open source software project for computational neuroanatomy, focusing mainly on -diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for -denoising, registration, reconstruction, tracking, clustering, visualization, and statistical -analysis of MRI data. - + Dipy is a free and open source software project for computational neuroanatomy, focusing mainly on + diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for + denoising, registration, reconstruction, tracking, clustering, visualization, and statistical + analysis of MRI data. + nipy/dipy
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: cc81ecc12226bfbf012da1ba33a7ce606f65711d Author: Horea Christian chymera eu> AuthorDate: Sat Sep 26 09:47:10 2020 + Commit: Horea Christian gmail com> CommitDate: Sat Sep 26 09:47:10 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc81ecc1 sci-biology/dipy: removed old version Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-0.11.0.ebuild | 34 -- 1 file changed, 34 deletions(-) diff --git a/sci-biology/dipy/dipy-0.11.0.ebuild b/sci-biology/dipy/dipy-0.11.0.ebuild deleted file mode 100644 index a6697dcda..0 --- a/sci-biology/dipy/dipy-0.11.0.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7} ) - -inherit distutils-r1 - -DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" -HOMEPAGE="http://nipy.org/dipy"; -SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] -" -DEPEND=" - test? ( ${RDEPEND} dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] -" - -python_test() { - distutils_install_for_testing - cd "${TEST_DIR}"/lib || die - nosetests || die -}
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: d5b03b77dfbddb39db63275c102e0258d04cd67d Author: Horea Christian chymera eu> AuthorDate: Sat Sep 26 09:46:32 2020 + Commit: Horea Christian gmail com> CommitDate: Sat Sep 26 09:46:32 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d5b03b77 sci-biology/dipy: PYTHON_COMPAT update Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-biology/dipy/dipy-0.11.0.ebuild | 6 +++--- sci-biology/dipy/dipy-.ebuild | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/sci-biology/dipy/dipy-0.11.0.ebuild b/sci-biology/dipy/dipy-0.11.0.ebuild index fed13e8a8..a6697dcda 100644 --- a/sci-biology/dipy/dipy-0.11.0.ebuild +++ b/sci-biology/dipy/dipy-0.11.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python2_7 python3_{4,5} ) +PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1 diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index ff74602cc..7eed19d09 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python2_7 python3_{4,5} ) +PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: bb3327e8e2e35ef8e460365ab01a9efd2576429d Author: Horea Christian chymera eu> AuthorDate: Mon Mar 23 02:23:23 2020 + Commit: Horea Christian gmail com> CommitDate: Mon Mar 23 02:23:23 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bb3327e8 sci-biology/dipy: version bump 1.1.1 Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Horea Christian chymera.eu> .../dipy/{dipy-0.14.0.ebuild => dipy-1.1.1.ebuild}| 15 --- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/sci-biology/dipy/dipy-0.14.0.ebuild b/sci-biology/dipy/dipy-1.1.1.ebuild similarity index 68% rename from sci-biology/dipy/dipy-0.14.0.ebuild rename to sci-biology/dipy/dipy-1.1.1.ebuild index 2d76b74a2..09d937d61 100644 --- a/sci-biology/dipy/dipy-0.14.0.ebuild +++ b/sci-biology/dipy/dipy-1.1.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python2_7 python3_{4,5} ) +PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1 @@ -22,17 +22,18 @@ RDEPEND=" sci-libs/scipy[${PYTHON_USEDEP}] " DEPEND=" + dev-python/packaging[${PYTHON_USEDEP}] dev-python/cython[${PYTHON_USEDEP}] dev-python/h5py[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/nose[${PYTHON_USEDEP}] ) + test? ( dev-python/pytest[${PYTHON_USEDEP}] ) " -# Tests for this release fail: https://github.com/nipy/dipy/issues/1531 +# Tests fail because they require data download: +# https://github.com/dipy/dipy/issues/2092 RESTRICT="test" python_test() { distutils_install_for_testing cd "${TEST_DIR}"/lib || die - nosetests || die + pytest -m "not network" || die }
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: b98d9410126e80774a4eb4a717f609f8724fb88c Author: Horea Christian yandex com> AuthorDate: Wed May 23 00:04:34 2018 + Commit: Horea Christian gmail com> CommitDate: Wed May 23 00:04:34 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b98d9410 sci-biology/dipy: version bump and improved deps Package-Manager: Portage-2.3.38, Repoman-2.3.9 .../dipy/{dipy-.ebuild => dipy-0.14.0.ebuild} | 17 ++--- sci-biology/dipy/dipy-.ebuild | 7 --- 2 files changed, 14 insertions(+), 10 deletions(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-0.14.0.ebuild similarity index 67% copy from sci-biology/dipy/dipy-.ebuild copy to sci-biology/dipy/dipy-0.14.0.ebuild index 604d53dbf..2d76b74a2 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-0.14.0.ebuild @@ -5,29 +5,32 @@ EAPI=6 PYTHON_COMPAT=( python2_7 python3_{4,5} ) -inherit distutils-r1 git-r3 +inherit distutils-r1 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" HOMEPAGE="http://nipy.org/dipy"; -SRC_URI="" -EGIT_REPO_URI="https://github.com/nipy/dipy"; +SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="test" RDEPEND=" + sci-libs/nibabel[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] " DEPEND=" - test? ( ${RDEPEND} dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] dev-python/cython[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/nose[${PYTHON_USEDEP}] ) " +# Tests for this release fail: https://github.com/nipy/dipy/issues/1531 +RESTRICT="test" + python_test() { distutils_install_for_testing cd "${TEST_DIR}"/lib || die diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 604d53dbf..e9761d633 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -18,14 +18,15 @@ KEYWORDS="" IUSE="test" RDEPEND=" + sci-libs/nibabel[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] " DEPEND=" - test? ( ${RDEPEND} dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] dev-python/cython[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/nose[${PYTHON_USEDEP}] ) " python_test() {
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: c9d1e70d355de4169f7118ccc4cd127708befb1e Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Jan 20 21:23:15 2018 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Jan 20 21:23:15 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9d1e70d sci-biology/dipy: switch git:// to https:// Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/dipy/dipy-0.11.0.ebuild | 2 +- sci-biology/dipy/dipy-.ebuild | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/dipy/dipy-0.11.0.ebuild b/sci-biology/dipy/dipy-0.11.0.ebuild index d7100b023..fbbd4d519 100644 --- a/sci-biology/dipy/dipy-0.11.0.ebuild +++ b/sci-biology/dipy/dipy-0.11.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 35d668ee5..604d53dbf 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -10,7 +10,7 @@ inherit distutils-r1 git-r3 DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" HOMEPAGE="http://nipy.org/dipy"; SRC_URI="" -EGIT_REPO_URI="git://github.com/nipy/dipy" +EGIT_REPO_URI="https://github.com/nipy/dipy"; LICENSE="BSD" SLOT="0"
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: ee185ba11606f530fd671403213a30f5384965e4 Author: Justin Lecher gentoo org> AuthorDate: Sun Jan 29 11:34:52 2017 + Commit: Justin Lecher gentoo org> CommitDate: Sun Jan 29 11:59:23 2017 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ee185ba1 sci-biology/dipy: QA fixes Drop empty line at EOF Add runtime deps for tests Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher gentoo.org> sci-biology/dipy/dipy-0.11.0.ebuild | 19 +-- sci-biology/dipy/dipy-.ebuild | 16 2 files changed, 17 insertions(+), 18 deletions(-) diff --git a/sci-biology/dipy/dipy-0.11.0.ebuild b/sci-biology/dipy/dipy-0.11.0.ebuild index 9c97079..1d2a9f4 100644 --- a/sci-biology/dipy/dipy-0.11.0.ebuild +++ b/sci-biology/dipy/dipy-0.11.0.ebuild @@ -1,14 +1,14 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=6 -PYTHON_COMPAT=( python2_7 python3_4 ) +PYTHON_COMPAT=( python2_7 python3_{4,5} ) inherit distutils-r1 -DESCRIPTION="computational neuroanatomy project focusing on diffusion MRI" +DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" HOMEPAGE="http://nipy.org/dipy"; SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" @@ -17,20 +17,19 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="test" -DEPEND=" - test? ( dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - " RDEPEND=" dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] - " +" +DEPEND=" + test? ( ${RDEPEND} dev-python/nose[${PYTHON_USEDEP}] ) + dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] +" python_test() { distutils_install_for_testing cd "${TEST_DIR}"/lib || die nosetests || die } - diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index 5bec12b..383ec8c 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -1,14 +1,14 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=6 -PYTHON_COMPAT=( python2_7 python3_4 ) +PYTHON_COMPAT=( python2_7 python3_{4,5} ) inherit distutils-r1 git-r3 -DESCRIPTION="computational neuroanatomy project focusing on diffusion MRI" +DESCRIPTION="Computational neuroanatomy project focusing on diffusion MRI" HOMEPAGE="http://nipy.org/dipy"; SRC_URI="" EGIT_REPO_URI="git://github.com/nipy/dipy" @@ -18,16 +18,16 @@ SLOT="0" KEYWORDS="" IUSE="test" -DEPEND=" - test? ( dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] -" RDEPEND=" dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] " +DEPEND=" + test? ( ${RDEPEND} dev-python/nose[${PYTHON_USEDEP}] ) + dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] +" python_test() { distutils_install_for_testing
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: b64756545e976ac82546fee7a43d02703ec0fda7 Author: Justin Lecher gentoo org> AuthorDate: Sat Jul 2 09:24:45 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sat Jul 2 09:25:12 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b6475654 sci-biology/dipy: fix whitespace error Signed-off-by: Justin Lecher gentoo.org> sci-biology/dipy/dipy-.ebuild | 21 ++--- 1 file changed, 10 insertions(+), 11 deletions(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index beb75e4..5bec12b 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -19,19 +19,18 @@ KEYWORDS="" IUSE="test" DEPEND=" -test? ( dev-python/nose[${PYTHON_USEDEP}] ) -dev-python/setuptools[${PYTHON_USEDEP}] -dev-python/cython[${PYTHON_USEDEP}] -" + test? ( dev-python/nose[${PYTHON_USEDEP}] ) + dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] +" RDEPEND=" dev-python/numpy[${PYTHON_USEDEP}] -sci-libs/scipy[${PYTHON_USEDEP}] -sci-libs/nibabel[${PYTHON_USEDEP}] -" + sci-libs/scipy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] +" python_test() { -distutils_install_for_testing -cd "${TEST_DIR}"/lib || die -nosetests || die + distutils_install_for_testing + cd "${TEST_DIR}"/lib || die + nosetests || die } -
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: 1afc16b8f25a66799bd25e2b2cfa9962d6715900 Author: Horea Christian yandex com> AuthorDate: Sat Jun 25 12:21:30 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Sat Jun 25 12:21:30 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1afc16b8 sci-biology/dipy: nre package Package-Manager: portage-2.3.0_rc1 sci-biology/dipy/dipy-.ebuild | 34 ++ sci-biology/dipy/metadata.xml | 21 + 2 files changed, 55 insertions(+) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild new file mode 100644 index 000..a3852cc --- /dev/null +++ b/sci-biology/dipy/dipy-.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_4 ) + +inherit distutils-r1 git-r3 + +DESCRIPTION="computational neuroanatomy project focusing on diffusion MRI" +HOMEPAGE="http://nipy.org/dipy"; +SRC_URI="" +EGIT_REPO_URI="git://github.com/nipy/dipy" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="" +IUSE="test" + +DEPEND=" + test? ( dev-python/nose[${PYTHON_USEDEP}] ) + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/cython + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + " + +src_test() { + emake test-code +} diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml new file mode 100644 index 000..80c312a --- /dev/null +++ b/sci-biology/dipy/metadata.xml @@ -0,0 +1,21 @@ + +http://www.gentoo.org/dtd/metadata.dtd";> + + +h@mail.ru +Horea Christian + + +s...@gentoo.org +Gentoo Science Project + + +Dipy is a free and open source software project for computational neuroanatomy, focusing mainly on +diffusion magnetic resonance imaging (dMRI) analysis. It implements a broad range of algorithms for +denoising, registration, reconstruction, tracking, clustering, visualization, and statistical +analysis of MRI data. + + +nipy/dipy + +
[gentoo-commits] proj/sci:master commit in: sci-biology/dipy/
commit: fb40d97766959cab126905bdade24c33d2dc2c72 Author: Horea Christian yandex com> AuthorDate: Sun Jun 26 22:21:03 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Sun Jun 26 22:21:03 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=fb40d977 sci-biology/dipy: implemented tests Package-Manager: portage-2.3.0_rc1 .../dipy/{dipy-.ebuild => dipy-0.11.0.ebuild} | 16 +--- sci-biology/dipy/dipy-.ebuild | 21 - 2 files changed, 21 insertions(+), 16 deletions(-) diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-0.11.0.ebuild similarity index 67% copy from sci-biology/dipy/dipy-.ebuild copy to sci-biology/dipy/dipy-0.11.0.ebuild index a3852cc..9c97079 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-0.11.0.ebuild @@ -6,29 +6,31 @@ EAPI=6 PYTHON_COMPAT=( python2_7 python3_4 ) -inherit distutils-r1 git-r3 +inherit distutils-r1 DESCRIPTION="computational neuroanatomy project focusing on diffusion MRI" HOMEPAGE="http://nipy.org/dipy"; -SRC_URI="" -EGIT_REPO_URI="git://github.com/nipy/dipy" +SRC_URI="https://github.com/nipy/dipy/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="test" DEPEND=" test? ( dev-python/nose[${PYTHON_USEDEP}] ) dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] " RDEPEND=" - dev-python/cython dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] " -src_test() { - emake test-code +python_test() { + distutils_install_for_testing + cd "${TEST_DIR}"/lib || die + nosetests || die } + diff --git a/sci-biology/dipy/dipy-.ebuild b/sci-biology/dipy/dipy-.ebuild index a3852cc..beb75e4 100644 --- a/sci-biology/dipy/dipy-.ebuild +++ b/sci-biology/dipy/dipy-.ebuild @@ -19,16 +19,19 @@ KEYWORDS="" IUSE="test" DEPEND=" - test? ( dev-python/nose[${PYTHON_USEDEP}] ) - dev-python/setuptools[${PYTHON_USEDEP}] - " +test? ( dev-python/nose[${PYTHON_USEDEP}] ) +dev-python/setuptools[${PYTHON_USEDEP}] +dev-python/cython[${PYTHON_USEDEP}] +" RDEPEND=" - dev-python/cython dev-python/numpy[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - " +sci-libs/scipy[${PYTHON_USEDEP}] +sci-libs/nibabel[${PYTHON_USEDEP}] +" -src_test() { - emake test-code +python_test() { +distutils_install_for_testing +cd "${TEST_DIR}"/lib || die +nosetests || die } +