This replaces run_apply() implementation with a new one that
uses the apply api that has been previously prepared in
apply.c and apply.h.

This shoud improve performance a lot in certain cases.

As the previous implementation was creating a new `git apply`
process to apply each patch, it could be slow on systems like
Windows where it is costly to create new processes.

Also the new `git apply` process had to read the index from
disk, and when the process was done the calling process
discarded its own index and read back from disk the new
index that had been created by the `git apply` process.

This could be very inefficient with big repositories that
have big index files, especially when the system decided
that it was a good idea to run the `git apply` processes on
a different processor core.

Also eliminating index reads enables further performance
improvements by using:

`git update-index --split-index`

For example here is a benchmark of a multi hundred commit
rebase on the Linux kernel on a Debian laptop with SSD:

command: git rebase --onto 1993b17 52bef0c 29dde7c

Vanilla "next" without split index:                1m54.953s
Vanilla "next" with split index:                   1m22.476s
This series on top of "next" without split index:  1m12.034s
This series on top of "next" with split index:     0m15.678s

(using branch "next" from mid April 2016.)

Benchmarked-by: Ævar Arnfjörð Bjarmason <ava...@gmail.com>
Signed-off-by: Christian Couder <chrisc...@tuxfamily.org>
---
 builtin/am.c | 65 +++++++++++++++++++++++++++++++++++++++++++-----------------
 1 file changed, 47 insertions(+), 18 deletions(-)

diff --git a/builtin/am.c b/builtin/am.c
index b77bf11..54c5728 100644
--- a/builtin/am.c
+++ b/builtin/am.c
@@ -28,6 +28,7 @@
 #include "rerere.h"
 #include "prompt.h"
 #include "mailinfo.h"
+#include "apply.h"
 
 /**
  * Returns 1 if the file is empty or does not exist, 0 otherwise.
@@ -1522,39 +1523,67 @@ static int parse_mail_rebase(struct am_state *state, 
const char *mail)
  */
 static int run_apply(const struct am_state *state, const char *index_file)
 {
-       struct child_process cp = CHILD_PROCESS_INIT;
+       struct argv_array apply_paths = ARGV_ARRAY_INIT;
+       struct argv_array apply_opts = ARGV_ARRAY_INIT;
+       struct apply_state apply_state;
+       int res, opts_left;
+       char *save_index_file;
+       static struct lock_file lock_file;
+       int force_apply = 0;
+       int options = 0;
+
+       if (index_file) {
+               save_index_file = get_index_file();
+               set_index_file((char *)index_file);
+       }
 
-       cp.git_cmd = 1;
+       if (init_apply_state(&apply_state, NULL, &lock_file))
+               die("BUG: init_apply_state() failed");
+
+       argv_array_push(&apply_opts, "apply");
+       argv_array_pushv(&apply_opts, state->git_apply_opts.argv);
+
+       opts_left = apply_parse_options(apply_opts.argc, apply_opts.argv,
+                                       &apply_state, &force_apply, &options,
+                                       NULL);
+
+       if (opts_left != 0)
+               die("unknown option passed thru to git apply");
 
        if (index_file)
-               argv_array_pushf(&cp.env_array, "GIT_INDEX_FILE=%s", 
index_file);
+               apply_state.cached = 1;
+       else
+               apply_state.check_index = 1;
 
        /*
         * If we are allowed to fall back on 3-way merge, don't give false
         * errors during the initial attempt.
         */
-       if (state->threeway && !index_file) {
-               cp.no_stdout = 1;
-               cp.no_stderr = 1;
-       }
+       if (state->threeway && !index_file)
+               apply_state.apply_verbosity = verbosity_silent;
 
-       argv_array_push(&cp.args, "apply");
+       if (check_apply_state(&apply_state, force_apply))
+               die("BUG: check_apply_state() failed");
 
-       argv_array_pushv(&cp.args, state->git_apply_opts.argv);
+       argv_array_push(&apply_paths, am_path(state, "patch"));
+
+       res = apply_all_patches(&apply_state, apply_paths.argc, 
apply_paths.argv, options);
 
        if (index_file)
-               argv_array_push(&cp.args, "--cached");
-       else
-               argv_array_push(&cp.args, "--index");
+               set_index_file(save_index_file);
 
-       argv_array_push(&cp.args, am_path(state, "patch"));
+       argv_array_clear(&apply_paths);
+       argv_array_clear(&apply_opts);
+       clear_apply_state(&apply_state);
 
-       if (run_command(&cp))
-               return -1;
+       if (res)
+               return res;
 
-       /* Reload index as git-apply will have modified it. */
-       discard_cache();
-       read_cache_from(index_file ? index_file : get_index_file());
+       if (index_file) {
+               /* Reload index as apply_all_patches() will have modified it. */
+               discard_cache();
+               read_cache_from(index_file);
+       }
 
        return 0;
 }
-- 
2.9.2.614.g4980f51

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