On 30 June 2014 14:56, Jakub Narębski jna...@gmail.com wrote:
Linus Torvalds wrote:
.. even there, there's another issue. With enough memory, the diff
itself should be fairly reasonable to do, but we do not have any
sane *format* for diffing those kinds of things.
The regular textual
Linus Torvalds wrote:
On Fri, Jun 27, 2014 at 10:48 AM, Junio C Hamano gits...@pobox.com wrote:
Even though the original question mentioned delta discovery, I
think what was being asked is not delta in the Git sense (which
your answer is about) but is can we diff two long sequences of text
Thank-you all for replying,
It's just as Jason suggests - Genbank, FASTA EMBL are more or less
the defacto standards, I suspect FASTA will be phased out because (to
my knowledge) it does not support gene annotation, nevertheless, they
are all text based.
These formats usually insert linebreaks
Hello,
As a software developer I've used git for years and have found it the
perfect solution for source control.
Lately I have found myself using git in a unique use-case - modifying
DNA/RNA sequences and storing them in git, which are essentially
software/source code for cells/life. For
On Fri, Jun 27, 2014 at 1:45 AM, Jarrad Hope m...@jarradhope.com wrote:
As a software developer I've used git for years and have found it the
perfect solution for source control.
Lately I have found myself using git in a unique use-case - modifying
DNA/RNA sequences and storing them in git,
Shawn Pearce spea...@spearce.org writes:
Git does source code well. I don't know enough to judge if DNA/RNA
sequence storage is similar enough to source code to benefit from
things like `git log -p` showing deltas over time, or if some other
algorithm would be more effective.
From my
On Fri, Jun 27, 2014 at 10:48 AM, Junio C Hamano gits...@pobox.com wrote:
Even though the original question mentioned delta discovery, I
think what was being asked is not delta in the Git sense (which
your answer is about) but is can we diff two long sequences of text
(that happens to consist
On Fri, Jun 27, 2014 at 12:38 PM, Linus Torvalds
torva...@linux-foundation.org wrote:
I think it might be possible to just specify a special diff algorithm
(git already supports that, obviously), and just introduce a new use
binary diffs with a textual representation model.
Another model
-Original Message-
From: Linus Torvalds
Sent: Friday, June 27, 2014 15:39
On Fri, Jun 27, 2014 at 10:48 AM, Junio C Hamano
gits...@pobox.com wrote:
Even though the original question mentioned delta discovery, I
think what was being asked is not delta in the Git sense (which
On Fri, Jun 27, 2014 at 12:55 PM, Jason Pyeron jpye...@pdinc.us wrote:
The issue will be, if we talk about changes other than same length
substitutions
(e.g. Down's Syndrome where it has an insertion of code) would require one
code
per line for the diffs to work nicely.
Not my area of
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