[gmx-users] How to control and interpret g_density analysis more precisely?

Dear Gromacs community, I've been using g_density to analyze distribution of atoms in an elongated box with a lipid bilayer and lipid monolayers at each end of the box. My results suggest that it found the density along the z-coordinate, which is the longest dimension in the box. That is indeed

Re: [gmx-users] How to control and interpret g_density analysis more precisely?

Thanks. Do you mean the -d option? What exactly does it mean by take the normal on the membrane? What membrane? What if I was simulating a system that doesn't have any membranes? Thank you, Alex On Fri, Aug 27, 2010 at 5:55 PM, Justin A. Lemkul jalem...@vt.edu wrote: Alex Matyushov wrote

[gmx-users] question about how to jump into an archived discussion...

Hello everyone, I don't get understand the following. I found an archive of a useful discussion, and I want to jump in with my own comment. But the button at the bottom of the page evidently only allows me to email the person directly. It says reply via email to: [person]. If I send the person an