Re:Re: [gmx-users] Questions about the MFFA boundary implementation of Gromacs?

, song.yongshun song.yongs...@163.com wrote: Dear all: I was using the MFFA version of Gromacs which is provided by m.j.louhivuori at http://md.chem.rug.nl/~mara/mffa.html. I have some quesition about this version: i.I saw the implementation of MFFA always with the flip-flop of lipid.Can I apply

[gmx-users] Questions about the MFFA boundery implementation of Gromacs?

Dear all: I was using the MFFA version of Gromacs which is provided by m.j.louhivuori at http://md.chem.rug.nl/~mara/mffa.html. I have some quesition about this version: i.I saw the implementation of MFFA always with the flip-flop of lipid.Can I apply the flip-flop with this MFFA version of

Re:[gmx-users] Applying periodic boundary conditions in energy minimization

Hi, Actually you have already applied pbc,and there seems nothing wrong. Some atoms are out of the box is common. If your box vector is correct,then Gromacs will run successfuly afterwards. At 2013-04-03 22:51:54,Abhinav Agrawal abhv.a...@gmail.com wrote: Hi, I have a polymer box on which I wish

[gmx-users] install gromacs 4.5.5 on cluster

hello gromacs users, I was trying to install gromacs 4.5.5 on the cluster. the cluster info: uname -a Linux mgr.itp 2.6.9-55.0.2.ELsmp #1 SMP Tue Jun 26 14:14:47 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux I have successfully installed fftw3 and gsl on it. then I try to install the Gromacs 4.5.5