Dear justin,
I have made the itp file on a basis of chapter 5 of gromacs. Every things
seems fine. my itp file for opls is as follow:
;
[ moleculetype ]
; Name nrexcl
DRG 3
[ atoms ]
; nr type resnr resid atom cgnr charge mass
1 opls_185 1 DRG HAD 1
Morteza Khabiri wrote:
Dear justin,
I have made the itp file on a basis of chapter 5 of gromacs. Every things
seems fine. my itp file for opls is as follow:
Seems fine is your own evaluation, but if grompp is giving you errors about an
incorrect topology, then indeed it is not. Did
Dear Justin,
thanks for your help. The last lines of my grompp are:
checking input for internal consistency...
calling /lib/cpp...
processing topology...
Generated 332520 of the 332520 non-bonded parameter combinations
Generating 1-4 interactions: fudge = 0.5
Generated 332520 of the 332520 1-4
* Justin A. Lemkul [EMAIL PROTECTED] [2008-09-10 05:46:07 -0400]:
Morteza Khabiri wrote:
Dear justin,
I have made the itp file on a basis of chapter 5 of gromacs. Every things
seems fine. my itp file for opls is as follow:
Seems fine is your own evaluation, but if grompp is giving you
Morteza Khabiri wrote:
Dear Justin,
thanks for your help. The last lines of my grompp are:
checking input for internal consistency...
calling /lib/cpp...
processing topology...
Generated 332520 of the 332520 non-bonded parameter combinations
Generating 1-4 interactions: fudge = 0.5
Generated
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