Re: [gmx-users] DNA orientation restrain

Hi, Depending on what you aim to do one option might be to make the DNA a pair of periodic molecules. That would keep them aligned with whatever box vector you chose. But again, that depends on what you aim to study. Erik 1 okt 2012 kl. 07.44 skrev 仝督读: Hi everyone, I am doing a DNA

Re: [gmx-users] DNA orientation restrain

An: gmx-users@gromacs.org Betreff: [gmx-users] DNA orientation restrain Hi everyone, I am doing a DNA simulation in a long simulation box (the lengthen of z is much larger than x and y). So I want to constrain the DNA molecule lying along the z axis. But I don't know how to realize

Re: [gmx-users] DNA orientation restrain

On Monday 01,October,2012 01:44 PM, 仝督读 wrote: Hi everyone, I am doing a DNA simulation in a long simulation box (the lengthen of z is much larger than x and y). So I want to constrain the DNA molecule lying along the z axis. But I don't know how to realize this in GROMACS. Actually I

[gmx-users] DNA orientation restrain

Hi everyone, I am doing a DNA simulation in a long simulation box (the lengthen of z is much larger than x and y). So I want to constrain the DNA molecule lying along the z axis. But I don't know how to realize this in GROMACS. Actually I notice there is orientation restraints in 4.3.5 of GMX