[gmx-users] Diagnoding + system blowing up

2012-07-28 Thread Shima Arasteh
 Hi all, My system has got BLOWING UP . I followed the protocol in http://www.gromacs.org/Documentation/Terminology/Blowing_Up and got as below: Step 1: If the crash is happening relatively early (within a few steps), set nstxout (or nstxtcout) to 1, capturing all possible frames.  Watch the

Re: [gmx-users] Diagnoding + system blowing up

2012-07-28 Thread Justin Lemkul
On 7/28/12 7:34 AM, Shima Arasteh wrote: Hi all, My system has got BLOWING UP . I followed the protocol in http://www.gromacs.org/Documentation/Terminology/Blowing_Up and got as below: Step 1: If the crash is happening relatively early (within a few steps), set nstxout (or nstxtcout)

Re: [gmx-users] Diagnoding + system blowing up

2012-07-28 Thread Shima Arasteh
@gromacs.org Cc: Sent: Saturday, July 28, 2012 5:25 PM Subject: Re: [gmx-users] Diagnoding + system blowing up On 7/28/12 7:34 AM, Shima Arasteh wrote:   Hi all, My system has got BLOWING UP . I followed the protocol in http://www.gromacs.org/Documentation/Terminology/Blowing_Up and got as below

Re: [gmx-users] Diagnoding + system blowing up

2012-07-28 Thread Shima Arasteh
...@yahoo.com; Discussion list for GROMACS users gmx-users@gromacs.org Cc: Sent: Saturday, July 28, 2012 5:25 PM Subject: Re: [gmx-users] Diagnoding + system blowing up On 7/28/12 7:34 AM, Shima Arasteh wrote:   Hi all, My system has got BLOWING UP . I followed the protocol in http

Re: [gmx-users] Diagnoding + system blowing up

2012-07-28 Thread Mark Abraham
On 28/07/2012 9:34 PM, Shima Arasteh wrote: Hi all, My system has got BLOWING UP . I followed the protocol in http://www.gromacs.org/Documentation/Terminology/Blowing_Up and got as below: Step 1: If the crash is happening relatively early (within a few steps), set nstxout (or nstxtcout)