Re: [gmx-users] Fwd: gmx-users Digest, Vol 79, Issue 102

2010-11-16 Thread Mark Abraham
On 15/11/2010 5:56 AM, Silvia Crivelli wrote: We have a visualization tool that allows us to visualize the changes in the energy during energy minimization. The areas with more intense color are those where the atoms contribute the most to the total energy value. I just wrote a plug-in to use

[gmx-users] Fwd: gmx-users Digest, Vol 79, Issue 102

2010-11-14 Thread Silvia Crivelli
We have a visualization tool that allows us to visualize the changes in the energy during energy minimization. The areas with more intense color are those where the atoms contribute the most to the total energy value. I just wrote a plug-in to use Gromacs for energy minimizations (or MD