Re: [gmx-users] Ion conduction through a protein-membrane system

2012-10-02 Thread Shima Arasteh
Thanks Peter for your explanation.   Sincerely, Shima - Original Message - From: Peter C. Lai To: Discussion list for GROMACS users Cc: Sent: Tuesday, October 2, 2012 10:10 AM Subject: Re: [gmx-users] Ion conduction through a protein-membrane system On 2012-10-01 11:16:43PM -0700

Re: [gmx-users] Ion conduction through a protein-membrane system

2012-10-02 Thread Shima Arasteh
Thanks Casten.   Sincerely, Shima - Original Message - From: Carsten Kutzner To: Shima Arasteh ; Discussion list for GROMACS users Cc: Sent: Tuesday, October 2, 2012 11:02 AM Subject: Re: [gmx-users] Ion conduction through a protein-membrane system Hi Shima, there is also a patch

Re: [gmx-users] Ion conduction through a protein-membrane system

2012-10-02 Thread Carsten Kutzner
Hi Shima, there is also a patch for Gromacs available to study ion conduction through membrane channels that you might find useful. Please take a look at this page: http://www.mpibpc.mpg.de/grubmueller/compel Best, Carsten On Oct 2, 2012, at 8:16 AM, Shima Arasteh wrote: > > > Dear use

Re: [gmx-users] Ion conduction through a protein-membrane system

2012-10-01 Thread Peter C. Lai
On 2012-10-01 11:16:43PM -0700, Shima Arasteh wrote: > > >  Dear users, > > I want to study ion conduction through a protein-memrane system. > First of all, I tried to simulate a usual protein-membrane system. I'd like > to know if it is possible to add asymmetrical number of ions to leaflets

[gmx-users] Ion conduction through a protein-membrane system

2012-10-01 Thread Shima Arasteh
 Dear users, I want to study ion conduction through a protein-memrane system. First of all, I tried to simulate a usual protein-membrane system. I'd like to know if it is possible to add asymmetrical number of ions to leaflets of membrane? Secondly, is it possible to  apply an external electr