[gmx-users] Making composite box in gromacs

2013-03-31 Thread Abhinav Agrawal
I have polymer and clay structures and I need to study their surface interaction. How do I keep a clay box on top of polymer. Thanks in advance. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at

Re: [gmx-users] Making composite box in gromacs

2013-03-31 Thread Justin Lemkul
On 3/31/13 6:38 AM, Abhinav Agrawal wrote: I have polymer and clay structures and I need to study their surface interaction. How do I keep a clay box on top of polymer. The concepts of top and bottom are irrelevant in a periodic system. You can position anything within the unit cell

Re: [gmx-users] Making composite box in gromacs

2013-03-31 Thread Justin Lemkul
: Justin Lemkul jalem...@vt.edu Subject: Re: [gmx-users] Making composite box in gromacs To: Discussion list for GROMACS users gmx-users@gromacs.org Message-ID: 5158203e.3020...@vt.edu Content-Type: text/plain; charset=ISO-8859-1; format=flowed On 3/31/13 6:38 AM, Abhinav Agrawal wrote: I have