Dear gmx users,
I have .pdb file. This .pdb file represents a dimer protein. When I try to
generate a topology file of it, GROMACS asks for terminals one by one, ( 2
N-terminals, 2 C-terminals ) . But after rotation of protein, 2 terminals are
lost and the total charge is incorrect.
The pdb
Hi Shima,
How did you rotate the structure? Probably the TER records got lost in
the process.
Cheers,
Tsjerk
On Sun, Sep 30, 2012 at 9:23 AM, Shima Arasteh
shima_arasteh2...@yahoo.com wrote:
Dear gmx users,
I have .pdb file. This .pdb file represents a dimer protein. When I try to
-users] Output of rotation
Hi Shima,
How did you rotate the structure? Probably the TER records got lost in
the process.
Cheers,
Tsjerk
On Sun, Sep 30, 2012 at 9:23 AM, Shima Arasteh
shima_arasteh2...@yahoo.com wrote:
Dear gmx users,
I have .pdb file. This .pdb file represents a dimer protein
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