RE: [gmx-users] Parameters for bonded interactions

2012-08-15 Thread Sebastien Cote
Thanks a lot Mark! Date: Wed, 15 Aug 2012 11:48:00 +1000 From: mark.abra...@anu.edu.au To: gmx-users@gromacs.org Subject: Re: [gmx-users] Parameters for bonded interactions On 15/08/2012 9:46 AM, Sebastien Cote wrote: Dear Gromacs users

RE: [gmx-users] Parameters for bonded interactions

2012-08-15 Thread Sebastien Cote
the .tpr file to 'human readable'? Thanks again, Sebastien   Date: Wed, 15 Aug 2012 11:48:00 +1000 From: mark.abra...@anu.edu.au To: gmx-users@gromacs.org Subject: Re: [gmx-users] Parameters for bonded interactions On 15/08/2012 9:46 AM, Sebastien Cote

Re: [gmx-users] Parameters for bonded interactions

2012-08-15 Thread Mark Abraham
parameters from their list. Mark Thanks again, Sebastien Date: Wed, 15 Aug 2012 11:48:00 +1000 From: mark.abra...@anu.edu.au To: gmx-users@gromacs.org Subject: Re: [gmx-users] Parameters for bonded interactions On 15/08/2012 9:46 AM, Sebastien Cote wrote

RE: [gmx-users] Parameters for bonded interactions

2012-08-15 Thread Sebastien Cote
Thanks Mark! This is exactly what I need.  Date: Wed, 15 Aug 2012 22:18:10 +1000 From: mark.abra...@anu.edu.au To: gmx-users@gromacs.org Subject: Re: [gmx-users] Parameters for bonded interactions On 15/08/2012 8:44 PM, Sebastien Cote wrote: After

[gmx-users] Parameters for bonded interactions

2012-08-14 Thread Sebastien Cote
Dear Gromacs users, In the topology file of the protein, we see every two atoms that share a bond, three atoms that share a bond angle, and four atoms that share a torsion angle. However, the parameters (equilibrium value, energy constant, phase) are not explicitly shown as Gromacs fetch them

Re: [gmx-users] Parameters for bonded interactions

2012-08-14 Thread Mark Abraham
On 15/08/2012 9:46 AM, Sebastien Cote wrote: Dear Gromacs users, In the topology file of the protein, we see every two atoms that share a bond, three atoms that share a bond angle, and four atoms that share a torsion angle. However, the parameters (equilibrium value, energy constant, phase)