[gmx-users] Re: LINCS with amber99SB ?

2011-08-09 Thread Yun Shi
Thank you for the reply. Just to clarify. In the original gromos 53a6 paper, all bonds were constrained, while in amber99sb paper only bonds involving H atoms were constrained. So as long as I stick to the same groups of bonds constrained as in the development of respective forcefields, it is

Re: [gmx-users] Re: LINCS with amber99SB ?

2011-08-09 Thread Justin A. Lemkul
Yun Shi wrote: Thank you for the reply. Just to clarify. In the original gromos 53a6 paper, all bonds were constrained, while in amber99sb paper only bonds involving H atoms were constrained. So as long as I stick to the same groups of bonds constrained as in the development of respective