[gmx-users] Reg dimers

Dear all, I have done protein-ligand dynamics.I got the final gro file.When converted to PDB, i observed that my active site has ligand but two chains of teh protein got separated. What might be the reason for this?should i consider this as an error in my simulation???kindly help me in this

Re: [gmx-users] Reg dimers

On 7/9/12 9:48 AM, Ramya LN wrote: Dear all, I have done protein-ligand dynamics.I got the final gro file.When converted to PDB, i observed that my active site has ligand but two chains of teh protein got separated. What might be the reason for this?should i consider this as an error in my

Re: [gmx-users] Reg dimers

Thanks a lot Justin On Mon, Jul 9, 2012 at 7:21 PM, Justin A. Lemkul jalem...@vt.edu wrote: On 7/9/12 9:48 AM, Ramya LN wrote: Dear all, I have done protein-ligand dynamics.I got the final gro file.When converted to PDB, i observed that my active site has ligand but two chains of teh