[gmx-users] Virtual sites setting

2013-03-28 Thread 라지브간디
Dear gmx, I would like to set virtual sites for CO molecules with some specific charge. As per GROMACS manual, I've created virtual site2 in topology file for CO. Also, given the information in .rtp file as well as added the COM(center of mass) atom in .gro file. However, when I use gromp, it

Re: [gmx-users] Virtual sites setting

2013-03-28 Thread Broadbent, Richard
Dear Rajiv, Without a clear explanation of what you are doing and the specific error message from grompp it is impossible to offer any sensible advice. Other pieces of information which might be useful would be, the topology file, the actual grompp line, and the gro file for a single CO molecule