[gmx-users] hblife

2010-01-28 Thread afsaneh maleki
Hi, would you please elaborate the first column in the hblife.xvg file? hblife.xyg is the output of the following command: g_hbond -life hblife.xvg this column don't show the real time in simulated system.what are these times? thanks in advance, Afsaneh -- gmx-users mailing list

Re: [gmx-users] hblife

2010-01-28 Thread Justin A. Lemkul
afsaneh maleki wrote: Hi, would you please elaborate the first column in the hblife.xvg file? hblife.xyg is the output of the following command: g_hbond -life hblife.xvg this column don't show the real time in simulated system.what are these times? Check the headers in the .xvg file;

Re: [gmx-users] hblife

2010-01-28 Thread afsaneh maleki
thanks dear justin' it is right that the output of the analysis tools generally writes axis labels and data set legends. in hblife.xyg file is written that x axis label Time (ps) and the last time is written 14300.001 whereas my simulated time is 4 ps not 143000.00 ps i send you this file

Re: [gmx-users] hblife

2010-01-28 Thread Erik Marklund
afsaneh maleki skrev: thanks dear justin' it is right that the output of the analysis tools generally writes axis labels and data set legends. in hblife.xyg file is written that x axis label Time (ps) and the last time is written 14300.001 whereas my simulated time is 4 ps not

Re: [gmx-users] hblife

2010-01-28 Thread Mark Abraham
- Original Message - From: afsaneh maleki maleki.afsa...@gmail.com Date: Friday, January 29, 2010 1:56 Subject: Re: [gmx-users] hblife To: jalem...@vt.edu, Discussion list for GROMACS users gmx-users@gromacs.org thanks dear justin' it is right that the output of the analysis tools

Re: [gmx-users] hblife

2010-01-28 Thread Mark Abraham
- Original Message - From: Mark Abraham mark.abra...@anu.edu.au Date: Friday, January 29, 2010 2:16 Subject: Re: [gmx-users] hblife To: Discussion list for GROMACS users gmx-users@gromacs.org - Original Message - From: afsaneh maleki maleki.afsa...@gmail.com Date: Friday