[gmx-users] missing parameters in auto-generated topology file?

Hi all, I used pdb2gmx and selected amber99sb for generation of itp files of a normal peptide within GROMACS 4.5.4. But I saw that all the bonds, angles, and dihedral parameters (c0, c1, c2 ...) were not present in the itp file, while only funct is defined. It seems the same thing happens with

Re: [gmx-users] missing parameters in auto-generated topology file?

Yun Shi wrote: Hi all, I used pdb2gmx and selected amber99sb for generation of itp files of a normal peptide within GROMACS 4.5.4. But I saw that all the bonds, angles, and dihedral parameters (c0, c1, c2 ...) were not present in the itp file, while only funct is defined. It seems the