Re: [gmx-users] pull code problem: between protofilaments

2011-10-03 Thread Shilpi Chaurasia
Dear Chris, Thank a lot for your reply. I am trying the pull code that you have suggested. And I would be more specific about the problem and code in my future mails. regards, Shilpi On 02/10/11, chris.ne...@utoronto.ca wrote: Dear Shilpi: Can you use something like this? pull  

[gmx-users] pull code problem: between protofilaments

2011-10-02 Thread chris . neale
Dear Shilpi: Can you use something like this? pull = umbrella pull_geometry= position pull_dim = N N Y pull_vec1= 0 0 0 pull_start = no pull_ngroups = 1 pull_group0 = PRO-1 pull_pbcatom0

[gmx-users] pull code problem: between protofilaments

2011-09-29 Thread Shilpi Chaurasia
Dear Gmx users, I am studying the interaction between the tubulin protofilaments arranged in parallel. For this operation, I have considered a tetramer and a dimer from two protofilaments respectively (say PRO-1 and PRO-2), tetramer in PRO-1 and a dimer in PRO-2. I want to move the dimer of