[gmx-users] pulling code

Dear Adam: I have a number of questions listed below. But first, I think it would be useful if you explain exactly what you want to accomplish and how you tried to do this with non-modified code and what problem you ran into that caused you to modify the code. After you outline that, plea

[gmx-users] pulling code

Hi all, I am trying to measure the energy curve of unwinding the SNARE protein complex. This requires pulling the C-termini of two helices apart from each other, while fixing certain other parts of the complex. To do this I excluded the reference group, so that all groups were pulled to absolute

[gmx-users] pulling code problem.

My pull.ppa file is as follows. verbose = noruntype = afmgroup_1 = Fe group_2 = His93reference_group = 4Nweights_1 = 55.847 reference_weights = 14.0067 14.0067 14.0067 14.0067weights_2 = 14.0067 1.008 12.011 12.011 12.011 14.0067 1.008 12.011 12.011 14.0067 12.011 15.9994reftype = comreflag = 1pull