Re: [gmx-users] tpbconv and tpr file problem...

2012-03-16 Thread Anthony Cruz Balberdi
On Wed, Mar 14, 2012 at 8:42 PM, Mark Abraham mark.abra...@anu.edu.auwrote: On 15/03/2012 5:33 AM, Anthony Cruz Balberdi wrote: Hi Users: I was trying to calculate the energy contribution of an specific ion in my simulation. After extract a given frame from the simulation, I recalculate

Re: [gmx-users] tpbconv and tpr file problem...

2012-03-16 Thread Mark Abraham
On 17/03/2012 12:39 AM, Anthony Cruz Balberdi wrote: On Wed, Mar 14, 2012 at 8:42 PM, Mark Abraham mark.abra...@anu.edu.au mailto:mark.abra...@anu.edu.au wrote: On 15/03/2012 5:33 AM, Anthony Cruz Balberdi wrote: Hi Users: I was trying to calculate the energy

Re: [gmx-users] tpbconv and tpr file problem...

2012-03-16 Thread Anthony Cruz Balberdi
Thanks On Fri, Mar 16, 2012 at 10:37 AM, Mark Abraham mark.abra...@anu.edu.auwrote: On 17/03/2012 12:39 AM, Anthony Cruz Balberdi wrote: On Wed, Mar 14, 2012 at 8:42 PM, Mark Abraham mark.abra...@anu.edu.auwrote: On 15/03/2012 5:33 AM, Anthony Cruz Balberdi wrote: Hi Users: I was

[gmx-users] tpbconv and tpr file problem...

2012-03-14 Thread Anthony Cruz Balberdi
Hi Users: I was trying to calculate the energy contribution of an specific ion in my simulation. After extract a given frame from the simulation, I recalculate the energies of this frame with mdrun -rerun. Then I used tpbconv and editconf to create a new gro file and a new tpr without the ion. I

Re: [gmx-users] tpbconv and tpr file problem...

2012-03-14 Thread Mark Abraham
On 15/03/2012 5:33 AM, Anthony Cruz Balberdi wrote: Hi Users: I was trying to calculate the energy contribution of an specific ion in my simulation. After extract a given frame from the simulation, I recalculate the energies of this frame with mdrun -rerun. Then I used tpbconv and editconf