Re: [gmx-users] Read mdcrd from AMBER --- Error Message

2012-03-08 Thread francesco oteri
Hi Catherine, you should install any gromacs *4.5.x*, and then you can use gromacs with each trajectory supported by VMD because gromacs is able to use VMD plugin to perform trajectory reading. Basically: 1) Install the latest gromacs version 2) Install VMD 3) Set the variable VMD_PLUGIN_PATH to

Re: [gmx-users] Read mdcrd from AMBER --- Error Message

2012-03-08 Thread Mark Abraham
On 9/03/2012 3:40 AM, a a wrote: Dear Sir/Madam, I learnt that we can use mdcrd from AMBER directly. I have used the following commands. /share1/gromacs/bin/g_covar -s xxx.pdb -f xxx.mdcrd -o -v An error message was obtained. Program g_covar, VERSION 4.0.7 Source code file: gmxfio.c, line: