[gmx-users] Rhamnose on 53a6

Hello again fellow gromacs users. I am looking to model a glucose-rhamnose disaccharide using the 53a6 forcefield. I wanted to take a look at the naming conventions for carbohydrates but I'm battling to find anything in the pdb2gmx force field files. I downloaded a package of force fields from

[gmx-users] Adding GROMOS force field to pdb2gmx

Here is a brief summary of my situation: From what my copy of gromacs tells me pdb2gmx is using a 53a6 forcefield from 2004. I want to use the more recent carbohydrate specific 53a6_carbo force field. I have only managed to find this force field in GROMOS format. What I ultimately want is just

[gmx-users] Where would I find the 45A4 GROMOS force field?

Hi all I have never posted to the mailing list before but it has proven very helpful in the past. I'm looking for the 45A4 force field. I've been asking Mr. Google but so far I haven't had any luck locating it. This is I imagine probably down to the wrong keywords or something I want to do

Re: [gmx-users] Where would I find the 45A4 GROMOS force field?

that much further along. I don't suppose you know offhand whether such a thing is possible? I see they have a myriad of force fields available on ATB including the other one I am interested in 53A6. Thanks again. On Wed, Mar 28, 2012 at 2:50 PM, Justin A. Lemkul jalem...@vt.edu wrote: Marc

Re: [gmx-users] Where would I find the 45A4 GROMOS force field?

: Marc Gordon wrote: Oh awesome. Thanks so much for this. I've never worked with GROMOS or gromacs themselves. I'm going to need to look up whether or not it is possible to use these files to generate files in the gromacs format required as input for NAMD now but at least having access