Dear users, I used g_saltbr to calculate the salt-bridge interactions using: g_saltbr -f ../traj.xtc -s ../topol.tpr -t 0.4 -sep It gave the output for each atom-atom interaction within the given cut-off. When I checked the atom type that corresponds to the atom number output in each file, side chain oxygen atoms of ASP and GLU was not present in any of the file. And most of the atoms that corresponds to the ASP and GLU were CB, CG or CD. Kindly someone clarify why is this so.
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