On 25/04/2012 3:24 PM, Albert wrote:
hello:
it is blue gene P. And the gromacs is single precision in the
cluster. Getting Loaded...And the administrator told me that I have to
use the multiples of 32 in the bg_size parameter. The number specified
in "-np" should be 4 times bg_size.
Yes,
hello:
it is blue gene P. And the gromacs is single precision in the
cluster. Getting Loaded...And the administrator told me that I have to
use the multiples of 32 in the bg_size parameter. The number specified
in "-np" should be 4 times bg_size.
It is even slower than my own workstation
On Tue, 24 Apr 2012 15:42:15 +0200
Albert wrote:
> hello:
>
>I am running a 60,000 atom system with 128 core in a blue gene
> cluster. and it is only 1ns/day here is the script I used for
You don't give any information what exact system that is (L/P/Q?), if
you run single or double pr
On 4/24/12 9:42 AM, Albert wrote:
hello:
I am running a 60,000 atom system with 128 core in a blue gene cluster. and it
is only 1ns/day here is the script I used for submitting jobs:
# @ job_name = gmx_test
# @ class = kdm-large
# @ error = gmx_test.err
# @ output = gmx_test.out
# @ wall_
hello:
I am running a 60,000 atom system with 128 core in a blue gene
cluster. and it is only 1ns/day here is the script I used for
submitting jobs:
# @ job_name = gmx_test
# @ class = kdm-large
# @ error = gmx_test.err
# @ output = gmx_test.out
# @ wall_clock_limit = 00:20:00
# @ job_t
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