Re: [gmx-users] Energy minimization has stopped....

2013-11-05 Thread jkrieger
What does your curve look like? What parameters are you using in the mdp? How big is your system and what kind of molecules are in there? Providing this kind of information would help people work out what the problem is. Then again it may be ok that the minimisation has converged without reaching

Re: [gmx-users] Energy minimization has stopped....

2013-11-05 Thread Justin Lemkul
On 11/5/13 6:28 AM, Kalyanashis Jana wrote: Hi, Whenever I am trying to do position retrained MD run, It has been stopped at middle of the MD run. I have given the following error. Can you please suggest me something to resolve this error? Energy minimization has stopped, but the forces

Re: [gmx-users] Energy minimization has stopped....

2013-11-05 Thread Kalyanashis Jana
Dear Justin, Can you please tell me, how I can solve this problem?? If I will change the coordinate of atom 15461, will it help me? But you know, I did this step changing the position of drug molecule and I got same error. On Tue, Nov 5, 2013 at 5:44 PM, Justin Lemkul jalem...@vt.edu wrote:

Re: [gmx-users] Energy minimization has stopped....

2013-11-05 Thread Justin Lemkul
On 11/5/13 7:31 AM, Kalyanashis Jana wrote: Dear Justin, Can you please tell me, how I can solve this problem?? If I will change the coordinate of atom 15461, will it help me? But you know, I did this step changing the position of drug molecule and I got same error. You should first do