#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+----------------------------
Reporter: bzschoche | Owner: lv
Type: enhancement | Status: assigned
Priority: major | Milestone: data-domains3
Component: data-stds | Resolution:
Keywords: | Blocked By: 381, 486
Blocking: |
-------------------------+----------------------------
Changes (by dconnolly):
* type: task => enhancement
Old description:
> ''Laurel reporting on behalf of Darcy Louzao:''
>
> Specifically, can you verify/update the date at which each data partner
> will be ready to receive the Diagnostic Query (DQ), for which the
> requirements are:
>
> • CDM v3.0 with SAS data types
> • All 15 tables present
> • Demographic, Enrollment, Encounter, Diagnosis, Procedures, Vital, and
> Harvest tables populated
>
> ||Site ||SAS CDM v3 Readiness Date/DQ Status
> ||Children's Mercy ||06/15/16
> ||Indiana U Regenstrief ||03/01/16
> ||Marshfield Clinic ||Completed DQ
> ||Med Coll Wisconsin ||03/31/16
> ||U of Minnesota AHC ||03/31/16
> ||U of Missouri HC ||06/30/16
> ||U of Nebraska ||3/15/16
> ||University of Iowa ||TBD
> ||University of Kansas ||~~DQ sent 2/2/16~~ March 16
> ||UT San Antonio ||03/16/16
> ||UT SW Med Ctr ||DQ sent 2/2/16
> ||UW Madison ||03/14/16
>
>
> Additionally, please keep the following points in mind for future
> planning:
> 1. We will send the Diagnostic Query based on the dates you provide (I
> will check-in the week prior to sending to verify readiness)
> 2. We will request a response in ~2 weeks
> 3. Requirements for the next step, Data Characterization, are:
> • Successful diagnostic response, ie. no exceptions noted (in the
> workplan they are described as “unexpected conditions”)
> • Locked/static data
> • Will need to submit an ETL ADD with their query response (the template
> is on our Data Characterization wiki)
New description:
prep-to-research readiness is evaluated in two steps:
1. Diagnostic Query
- official distribution is via popmednet
- [https://github.com/PCORnet-DRN-OC/PCORnet-Diagnostic-Query
PCORnet-DRN-OC/PCORnet-Diagnostic-Query] SAS code is available on github
- results are due back to DRN-OC March 25th (see comment:24 for
timeline details)
2. Data Characterization
- official distribution is via popmednet
- [https://github.com/PCORnet-DRN-OC/PCORnet-Data-Characterization
PCORnet-DRN-OC/PCORnet-Data-Characterization] SAS code is available on
github
- results are due back to the DRN-OC April 8th (comment:24)
Diagnostic Query (DQ) requirements:
- CDM v3.0 with SAS data types
- All 15 tables present
- Demographic, Enrollment, Encounter, Diagnosis, Procedures, Vital, and
Harvest tables populated
Data Characterization requirements:
- Successful diagnostic response, i.e. no exceptions noted (in the
workplan they are described as “unexpected conditions”)
- Locked/static data
- Will need to submit an ETL ADD with their query response
- the template is on the [https://pcornet.imeetcentral.com/drnoc-
workgroups/doc/42875655/w-DataCharacterization Data Characterization
wiki])
The DRN shares schedule and tracking info via imeetcentral:
- [https://pcornet.imeetcentral.com/drnoc-workgroups/file/43823210/
Timeline Phase II Diagnostic and Data Characterization Queries.xlsx]
- [https://pcornet.imeetcentral.com/drnoc-workgroups/file/43982772/ phase
II high-level tracking.xlsx]
Research readiness (as opposed to prep-to-research readiness) should
follow in one or more separate tickets. One reference on the whole process
is a 5 Oct 2015 DRN OC presentation (ticket:266#comment:10); the Data
Characterization wiki may have more up-to-date materials.
--
Comment:
replacing out-of-date schedule in ticket description with pointer(s) to
definitive info.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:32>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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