RE: [External] Re: Babel/ DROC 55 question

[Gryzlak, Brian M]

A demo on Tuesday would be helpful for UIOWA.
Thanks,
BG

From: Dan Connolly 
Sent: Thursday, October 17, 2019 5:34 PM
To: Gryzlak, Brian M ; gpc-dev@listserv.kumc.edu
Subject: [External] Re: Babel/ DROC 55 question

Do you have 
PortQuery<https://informatics.gpcnetwork.org/trac/Project/wiki/PortQuery> 
installed? The "XML Message Stack" stuff is a little obscure. I can demo on 
Tuesday.
PortQuery user directions

  1.  In the other i2b2 (i.e. babel):

 *   Run a query.

*   Make sure debug mode is on: look for the Show XML Message Stack 
button: <>, especially in the top right Query Tool section.

 *   Open the XML Message Stack and find the 
runQueryInstance_fromQueryDefinition message for your query (recent messages 
are at the bottom of the list)
 *   Copy the query_definition element, including its tags.

  1.  Then, in this i2b2,

 *   Paste below.
 *   Hit Load Query below.
 *   Select the Find Patients tab to see your query.

Installation

Installation follows the i2b2 plug-in 
install/register<https://community.i2b2.org/wiki/display/webclient/Web+Client+Plug-in+Developers+Guide>
 model.

The deploy/add_to_site.py script can help:

$ webclient=...htdocs/i2b2/webclient

$ plugins=${webclient}/js-i2b2/cells/plugins

$ mkdir -p ${plugins}/HERON

$ unzip -q -o -d ${plugins}/HERON/PortQuery/ portaquery.zip

$ python ${plugins}/WIP/PortQuery/deploy/add_to_cell.py PortQuery 
${webclient}/js-i2b2/i2b2_loader

https://bitbucket.org/DanC/portaquery/src/default/ <- 
https://informatics.gpcnetwork.org/trac/Project/wiki/PortQuery



From: Gpc-dev 
mailto:gpc-dev-boun...@listserv.kumc.edu>> 
on behalf of Gryzlak, Brian M 
mailto:brian-gryz...@uiowa.edu>>
Sent: Thursday, October 17, 2019 3:58 PM
To: gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu> 
mailto:gpc-dev@listserv.kumc.edu>>
Subject: Babel/ DROC 55 question


Hi everyone,



Can someone advise UIOWA on how to grab queries in Babel in XML and run them on 
our local i2b2 instance?  We have access to Babel and can copy the XML code for 
the DROC 55 request but can't figure out how to transfer that logic and run 
counts.

Thanks,

Brian



Brian M. Gryzlak, MSW, MA

Project Coordinator

S414 CPHB

319.335.8218

The University of Iowa

Iowa City, IA 52242

brian-gryz...@uiowa.edu<mailto:brian-gryz...@uiowa.edu>



Health Effectiveness Research Center 
(HERCe)<http://www.public-health.uiowa.edu/herce/>


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Re: Babel/ DROC 55 question

[Dan Connolly]

Do you have 
PortQuery<https://informatics.gpcnetwork.org/trac/Project/wiki/PortQuery> 
installed? The "XML Message Stack" stuff is a little obscure. I can demo on 
Tuesday.
PortQuery user directions

  1.  In the other i2b2 (i.e. babel):
 *   Run a query.
*   Make sure debug mode is on: look for the Show XML Message Stack 
button: <>, especially in the top right Query Tool section.
 *   Open the XML Message Stack and find the 
runQueryInstance_fromQueryDefinition message for your query (recent messages 
are at the bottom of the list)
 *   Copy the query_definition element, including its tags.
  2.  Then, in this i2b2,
 *   Paste below.
 *   Hit Load Query below.
 *   Select the Find Patients tab to see your query.

Installation

Installation follows the i2b2 plug-in 
install/register<https://community.i2b2.org/wiki/display/webclient/Web+Client+Plug-in+Developers+Guide>
 model.

The deploy/add_to_site.py script can help:

$ webclient=...htdocs/i2b2/webclient
$ plugins=${webclient}/js-i2b2/cells/plugins
$ mkdir -p ${plugins}/HERON
$ unzip -q -o -d ${plugins}/HERON/PortQuery/ portaquery.zip
$ python ${plugins}/WIP/PortQuery/deploy/add_to_cell.py PortQuery 
${webclient}/js-i2b2/i2b2_loader

https://bitbucket.org/DanC/portaquery/src/default/ <- 
https://informatics.gpcnetwork.org/trac/Project/wiki/PortQuery



From: Gpc-dev  on behalf of Gryzlak, Brian M 

Sent: Thursday, October 17, 2019 3:58 PM
To: gpc-dev@listserv.kumc.edu 
Subject: Babel/ DROC 55 question


Hi everyone,



Can someone advise UIOWA on how to grab queries in Babel in XML and run them on 
our local i2b2 instance?  We have access to Babel and can copy the XML code for 
the DROC 55 request but can’t figure out how to transfer that logic and run 
counts.

Thanks,

Brian



Brian M. Gryzlak, MSW, MA

Project Coordinator

S414 CPHB

319.335.8218

The University of Iowa

Iowa City, IA 52242

brian-gryz...@uiowa.edu<mailto:brian-gryz...@uiowa.edu>



Health Effectiveness Research Center 
(HERCe)<http://www.public-health.uiowa.edu/herce/>


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Babel/ DROC 55 question

[Gryzlak, Brian M]

Hi everyone,

Can someone advise UIOWA on how to grab queries in Babel in XML and run them on 
our local i2b2 instance?  We have access to Babel and can copy the XML code for 
the DROC 55 request but can't figure out how to transfer that logic and run 
counts.
Thanks,
Brian

Brian M. Gryzlak, MSW, MA
Project Coordinator
S414 CPHB
319.335.8218
The University of Iowa
Iowa City, IA 52242
brian-gryz...@uiowa.edu

Health Effectiveness Research Center 
(HERCe)

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