gpc-dev 29 Sep agenda and meeting notes

2020-09-29 Thread Dan Connolly 
What else for today's meeting?

KUMC is scheduled to scribe.
https://docs.google.com/document/d/18XVjBZvbPuJSLl2GLuFhpk7XrCAFwX_-pEq5BqeSPIc/edit

agenda snapshot, including the usual logistics details:

  1.  Convene, take roll, review records and plan the next meeting(s).

 *   11:00 a.m. Central Time.
​Meeting ID and access code: 
817-393-381; call +1 
(571) 317-3131

 *   Roll; Reminder - put site after your name in 
GoToMeeting preferences
GPC DevTeams 
represented? KUMC (chair, scribe), UIOWA, MCW, MCRI, UNMC (regrets JRC), 
UTHSCSA, UTSW, MU, IndianaU, Utah, Allina, Intermountain, UTH

 *   Comments on the agenda? (ref 
SoftwareDev#tracking)
 On last week’s 
763notes?
 (#12)
Recent tickets 
opened/closed - FYI 
(i.e. not intended for discussion)

*   #765 (get volume / quality threshold for Sentinel participation) 
created

*   #766 (DeathDataSharing - document license / justification change) 
created

 *   Next meeting(s): Oct 6; scribe: Allina? UNMC?

*   Note scribe 
rotation
 appendix

*   #759 
covid19 PCORNet 
datamarts: PHII 
(contracting group for CDC) is waiting for their award. 15 Sep + ~3 weeks?

  2.  PCORNet CDM Cycle 8, Third Refresh DC 
v5.13?
 5 Oct distribution; 26 Oct results due
Ref 2020 Data Curation Queries from ​DRNOC Forum July 
2020

 *   FW: CDM v6 draft specification for comment 
   Russ Waitman
Laura, Alex to review and send email to GPC dev. Done:

*   CDM 6.0 review responses from MCW 
   Stoddard, 
Alexander

*   CDM 6.0 review responses from MCW 
   Manuel, Laura 
S M

 *   UNMC at risk for 26 Oct

 *   Performance reports [?]

  3.  
Milestone:tumor-reg-18

 *   #749 
PCORNet style TUMOR 
table - 
kumc-bmi/naaccr-tumor-data
#760
 duplicates in tumor table: collect data from 
sites - DROC 
Request 
#82
 - SAS code for DROC #82
Build a TUMOR 
table, run SAS code and return results to 
https://redcap.kumc.edu/surveys/?s=PC3Y8DXNTH
any technique to get it into the form specified in tumor 
table.version1.2.xlsx
 is sufficient.

*   Submitted: UIOWA, UTHSCSA, MCW

*   (UNMC, Utah, Allina, Intermountain not expected to participate for 
reasons given in earlier meetings.)

*   KUMC - DC: to see that this gets done - at risk

*   MCRI -  submitted last week

*   Indiana - Jeff   ETA mid-late Sept - Tony F.

*   UTSW - PR: Changed update to merge; ready to submit in the next few 
days (after 8 Sep) - still in progress - no update

*   MU - Will look at the code from MCW and ask questions as needed, 
query received, work not started

  4.  #411 Nebraska 
lexicon update
UNMC to send the updated ontology (RxNorm, SNOMED-CT, LOINC, ICD-10CM) to MCW, 
and Intermountain


wash your hands 
… wear a 
mask and social distance

--
Dan

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RE: gpc-dev 29 Sep agenda and meeting notes

2015-09-29 Thread Dan Connolly 
wrong address again!

From: Dan Connolly
Sent: Monday, September 28, 2015 10:46 AM
To: gpc-...@lists.kumc.edu
Subject: gpc-dev 29 Sep agenda and meeting notes


29 Sep shared 
agenda/notes<https://docs.google.com/document/d/1QAzLdh381RGkyEHkTiAcWroWJpAjOvH2QpEb4nWhBCY/edit>

current proposal:




  1.  Convene, take roll, review records and plan next meeting

 *   ​Meeting ID and access code: 
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 
(571) 317-3131

 *   roll: all 12 
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> 
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences

*   today's scribe: Jim McClay, UNMC

 *   comments on the agenda? on last week’s notes 
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)? recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> FYI 
(note also recent ticket comments 
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):

*   Ticket #328 (Codebook for breast cancer aggregated-response 
dataset) closed 
<https://informatics.gpcnetwork.org/trac/Project/ticket/328#comment:10> fixed

*   Ticket #372 (CMS Linkage Pilot Project Governance) created 
<https://informatics.gpcnetwork.org/trac/Project/ticket/372>

*   Ticket #371 (Breast Cancer - Codebook/datamart using REDCap naming 
conventions) created and closed 
<https://informatics.gpcnetwork.org/trac/Project/ticket/371#comment:1> wontfix

*   Ticket #346 (MU data sharing workflow and governance) closed 
<https://informatics.gpcnetwork.org/trac/Project/ticket/346#comment:4> invalid

*   #360 (how to aggregate BMI and the like for breast cancer 
analysis?) 
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/360#comment:1> 
fixed

 *   Next Meeting: 6 October Scribe Volunteer?

  2.  milestone: 
babel-lec2-prep<https://informatics.gpcnetwork.org/trac/Project/milestone/babel-lec2-prep>

 *   #345<https://informatics.gpcnetwork.org/trac/Project/ticket/345>, #373 
(Updated Babel Counts for CMH, MU) 
<https://informatics.gpcnetwork.org/trac/Project/ticket/373> closed fixed

 *   #239 WISC - terms submitted; fidgety details remain

 *   #367<https://informatics.gpcnetwork.org/trac/Project/ticket/367> 
update KUMC babel terms w.r.t 
ICD10<https://informatics.gpcnetwork.org/trac/Project/ticket/367> - still 
hoping, but at-risk

 *   #169<https://informatics.gpcnetwork.org/trac/Project/ticket/169> MCW?

  3.  
milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
 / 
milestone:drn-query-1<https://informatics.gpcnetwork.org/trac/Project/milestone/drn-query-1>

 *   #191<https://informatics.gpcnetwork.org/trac/Project/ticket/191> 
represent PCORI CDM 2.x terminology as i2b2 
metadata<https://informatics.gpcnetwork.org/trac/Project/ticket/191> - UNMC 
approach

*   Transitive Closure 
Paper_20150311final.pdf<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/191/Transitive%20Closure%20Paper_20150311final.pdf>​<https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/191/Transitive%20Closure%20Paper_20150311final.pdf>

*   PCORI network query 
interoperation.pptx<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/191/PCORI%20network%20query%20interoperation.pptx>​<https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/191/PCORI%20network%20query%20interoperation.pptx>

 *   #240: task: Data Characterization queries for phase 1 CDM V1 
compliance 
(assigned)<https://informatics.gpcnetwork.org/trac/Project/ticket/240>

 *   #160<https://informatics.gpcnetwork.org/trac/Project/ticket/160> 
reproducible GPC, CDM refresh at a critical mass of GPC 
sites<https://informatics.gpcnetwork.org/trac/Project/ticket/160>

  4.  milestone: 
cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>

 *   chinotype<https://github.com/UTHSCSA-CIRD/chinotype> demo (San 
Antonio) (#138<https://informatics.gpcnetwork.org/trac/Project/ticket/138>)

 *   #360 (how to aggregate BMI and the like for breast cancer analysis?) 
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/360#comment:1>

  5.  
milestone:data-quality-q3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality-q3>
 - update ETA

 *   #366 oracle 
version<https://informatics.gpcnetwork.org/trac/Project/ticket/366> closed 
adbbe09<https://bitbucket.org/DanC/gpc-qa-quarterly/commits/adbbe098233bd0a5ddec95cb183f705b01856ada>



--
Dan

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